Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,519,912 – 5,520,030 |
Length | 118 |
Max. P | 0.875604 |
Location | 5,519,912 – 5,520,030 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.63 |
Mean single sequence MFE | -33.05 |
Consensus MFE | -23.95 |
Energy contribution | -23.07 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.31 |
Mean z-score | -2.01 |
Structure conservation index | 0.72 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5519912 118 - 27905053 GAAUUUACUCUUUGUCGAGCCGACAACGGCUAAAGUCUGUCGACAUGCAGGAAUGUUUGUGGAGUA--UUAGCUUACUAUAUAUUGGCUAAACUGGCUUUAAACAUUGUCGAAUCGAUAA ...........(((((((..((((((.(..(((((((..((.(((.(((....))).))).))((.--((((((...........)))))))).)))))))..).))))))..))))))) ( -35.60) >DroSim_CAF1 6773 118 - 1 GAAUUUACUCUUUGUCGAGCCGACAACGGCUAAUGUCUGUCGACGUGCAGGAAUGUUUAUGGAGUA--UUAGCUUACUAUAUAUUGGCUAAACUGGCUUUAAGCAUUGUCGAAUCGACAA ...........(((((((..((((((.(((((((((((((.(((((......))))).))))).))--))))))...........((((.....)))).......))))))..))))))) ( -35.10) >DroEre_CAF1 6800 120 - 1 GAAUUUACUCUUUGUCGAGCCGACAAGUGUUAAAGUCUUUCGGCAUACAGGAAUGUUUAUGGAGUUACGGAGCUUACCAAAUAUUGGCCUAACUGACUUUAAGCUUUGUCGCAUCGGCGA ...........(((((((..(((((((..((((((((....(((.......(((((((...(((((....)))))...))))))).))).....))))))))..)))))))..))))))) ( -33.50) >DroYak_CAF1 6811 115 - 1 GAAUAUACUCUUCGUCGAGCCGACAACGGCUAAAGUCUUUCUGCAUACAGGAAUGUUUAUGGAGUA--UAAGCUUACUAAAUAUCAGGCAAACUGACUUUG---CUUGUUGAAUCAGAGA .......((((...((((((((....))))(((((((((((((....))))))((((((((.((((--......))))...))).)))))....)))))))---....))))...)))). ( -28.00) >consensus GAAUUUACUCUUUGUCGAGCCGACAACGGCUAAAGUCUGUCGACAUACAGGAAUGUUUAUGGAGUA__UUAGCUUACUAAAUAUUGGCCAAACUGACUUUAAGCAUUGUCGAAUCGACAA ...........(((((((..((((((....(((((((....(((((......)))))....((((......))))...................)))))))....))))))..))))))) (-23.95 = -23.07 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:47 2006