Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,510,331 – 5,510,422 |
Length | 91 |
Max. P | 0.694758 |
Location | 5,510,331 – 5,510,422 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 81.08 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -20.04 |
Energy contribution | -19.82 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.41 |
Mean z-score | -1.78 |
Structure conservation index | 0.65 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5510331 91 - 27905053 CAAGAGCUUCUUUGAGGCCAAGAAACUGGUGUGAGGUGCUC--CGG-GGCUAGGGCAUCAUCAGCAC---CACUGGCCAACCACUGGCCUCAUUGUU .........(..((((((((......(((((((((((((.(--(..-.....))))))).))).)))---)).(((....))).))))))))..).. ( -34.60) >DroSec_CAF1 4520 91 - 1 CAAGAGCUUCUUUGAGGCCAAGAAACUGGUGUGAGGUGCUC--CGG-GGCUAGGGCAUCAUCACCAC---CACUGGCCAACCACUGGCCUCAUUGUU .........(..((((((((......(((((((((((((.(--(..-.....))))))).))).)))---)).(((....))).))))))))..).. ( -34.60) >DroSim_CAF1 4511 91 - 1 CAAGAGCUUCUUUGAGGCCAAGAAACUGGUGUGAGGUGCUC--CGG-GGCUAGGGCAUCAUCAGCAC---CACUGGCCAACCACUGGCCUCAUUGUU .........(..((((((((......(((((((((((((.(--(..-.....))))))).))).)))---)).(((....))).))))))))..).. ( -34.60) >DroEre_CAF1 4553 88 - 1 UAAGAGCUUCUUUGAGGCCAAGAAACUGGUGUGAGGUGCUC--CGGAAACUGCGGCAUCAUCAGCAC---CACUGGCC----ACCGGCCUCAUUGUU .........(..(((((((.......((((((((((((((.--((....).).)))))).))).)))---))..((..----.)))))))))..).. ( -32.70) >DroWil_CAF1 5524 91 - 1 GAAGAGCUUCUUUGAAGCCAAGAAACUGGUCUGAAGAAUUAACGAG-UGCUU-GGUAUCUUCAAUUUAUAUUCUGCUCAUCAUUUGGCUUCAU---- ((((.....))))(((((((((((..(((..((((((.....(((.-...))-)...))))))..)))..))))..........)))))))..---- ( -18.60) >DroYak_CAF1 4559 88 - 1 CAAGAGCUUCUUUGAGGCCAAGAAACUGGUGUGAGGUGCUC--CGGAGGCUAGUGCAUCAUCAGCAC---CACUGGCC----ACCGGCCUUAUUGUU .........(..(((((((......((((.((.....)).)--))).((((((((............---))))))))----...)))))))..).. ( -30.80) >consensus CAAGAGCUUCUUUGAGGCCAAGAAACUGGUGUGAGGUGCUC__CGG_GGCUAGGGCAUCAUCAGCAC___CACUGGCCAACCACUGGCCUCAUUGUU ............((((((((......(((((((..(((((........((....))......)))))...)))..)))).....))))))))..... (-20.04 = -19.82 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:46 2006