Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,502,859 – 5,502,979 |
Length | 120 |
Max. P | 0.695229 |
Location | 5,502,859 – 5,502,979 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.39 |
Mean single sequence MFE | -38.60 |
Consensus MFE | -24.50 |
Energy contribution | -25.45 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.43 |
Mean z-score | -1.59 |
Structure conservation index | 0.63 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5502859 120 - 27905053 CAUGUGACCAUUGCCAUCGAAAUAGGAGCUGGUCGUAUCGAAGCCGUGGAUGAGUUCAUGACCAACGAUAAAACCCAAUGUGCCGAAUUUCAGGGAAAUCGGCAGGUGGCGUUGGUAUAU .(((((.(((.(((((((............(((..(((((..(.((((((....))))))..)..)))))..))).....((((((.(((....))).))))))))))))).)))))))) ( -40.20) >DroSec_CAF1 2536 120 - 1 CAAUUGACCAUUGCCAUUGAAAUGGGCGCUGGUGGUAUCGAAGGCGUGGAUGAGUUCAUGACCAACGAUAAAACCCAAGGUGCCGAAUUUCAGGGAAAGCGGCAGGUGGCGGUGGUAUAU ......(((((((((((((((((.(((((((((..(((((..((((((((....)))))).))..)))))..)))...))))))..)))))).......(....)))))))))))).... ( -47.80) >DroAna_CAF1 2393 120 - 1 AGGUUCACCGUUUCCAUCGAAUAAGAAUCCAAAGGUAUCGAAGCCAUGGGUGAGUUCAUGGCCCAGAACAAAGCCGAGCGUUCCGAACUUCAAAGCGUCUGGCCAAAAAGGAUGAUAAAC ....(((((((((((((.((((....(((((..(((......))).)))))..))))))))....))))...((((..((((..(.....)..))))..))))......)).)))..... ( -28.70) >DroSim_CAF1 2557 120 - 1 CAAUUGACCAUUGCCAUUGAAAUAGGCGCUGGUGGUAUCGAAGCCGUGGAUGAGUUCAUGACCAACGAUAAAACCCAAGGUGCCGAAUUUCAGGGAAAGUGGCAGGUGGCGGUGGUAUAU ......(((((((((((((((((.(((((((((..(((((..(.((((((....))))))..)..)))))..)))...))))))..)))))).............))))))))))).... ( -42.31) >DroEre_CAF1 2492 120 - 1 CAACUGACCGUUGUCGUUGAAAUUGGAGCUGGAGGUAUCGAAGCCGUGAACGAGUUCGUGACCCACGAUAAAGCCCAAGGUGCCGAAUUUCAGGGAGAGCGGCAGGUUUCGGUGGUAUAU ...(((.(((((.((.((((((((.(.((((..(((..((((..((....))..))))..)))..)).....(((...)))))).)))))))).)).))))))))............... ( -39.10) >DroYak_CAF1 2624 120 - 1 CAAUUGACCGUUGCUAUUGUAAUUGAAGCUGGUCGGAUCGAAGCCGUGGAUGAGCUCGUGACCCACGAUAAAGCCCAAGGUGCCGAAUUUCAGGGAGAGCGGCAGGUGGCGGUGGUAUAU ......((((..((((((....(((..(((.(((.(..((....))).))).)))(((((...))))).......)))..(((((..(((....)))..)))))))))))..)))).... ( -33.50) >consensus CAAUUGACCAUUGCCAUUGAAAUAGGAGCUGGUGGUAUCGAAGCCGUGGAUGAGUUCAUGACCAACGAUAAAACCCAAGGUGCCGAAUUUCAGGGAAAGCGGCAGGUGGCGGUGGUAUAU ......((((((((((((............(((..(((((..(.((((((....)))))).)...)))))..))).....(((((..(((....)))..))))))))))))))))).... (-24.50 = -25.45 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:39 2006