Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,500,797 – 5,500,917 |
Length | 120 |
Max. P | 0.662957 |
Location | 5,500,797 – 5,500,917 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.14 |
Mean single sequence MFE | -16.94 |
Consensus MFE | -0.34 |
Energy contribution | -0.58 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.25 |
Mean z-score | -1.43 |
Structure conservation index | 0.02 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5500797 120 + 27905053 UCCACCUGUUAACUACCUGUUAUCCACCUGUUAACUAAAUGGAUACACCUGUUAACCACCAAACCAACAAACAUUGUAAACAAACUCCAUGUUACCAAGGCAACAUAGCUAAGAUGUUAA .......((((((....(((.(((((...(....)....))))))))...)))))).............((((((...((((.......)))).....(((......)))..)))))).. ( -16.10) >DroSec_CAF1 429 109 + 1 ACCACCUGUUAUCCACCUGUUA-----------ACCACCUGGAUACACCUGUUGGCCACCAAAGCAACAAGCACUGUAAACCAACUCCAUAUUACCAACGCAACAUAGCUUAGAUGUUAA ......(((.(((((..((...-----------..))..))))))))...(((((....((..((.....))..))....)))))....................((((......)))). ( -14.60) >DroSim_CAF1 429 109 + 1 UCCACCUGUUAACUACCUGUUA-----------ACCACCUGGAUACACUUGUUGGCCACCAAAGCAACAAGCACUGUAAACAAACUUCAUAUUACCAACGCAACAUAGCUUAGAUGUUAA ((((...((((((.....))))-----------))....))))(((((((((((..........)))))))...))))...........................((((......)))). ( -17.70) >DroEre_CAF1 422 106 + 1 GCCACCUGUUAUCCACCAGUUA-----------GGUACCUGA-AACACCUGA-AACCACCAACCCAACAAACACUUCAAACAAACUCCAUAUUACCAAGGAAACAUAACUUGGAGGU-AA (((.((.(((((.......(((-----------(((......-...))))))-.............................................(....))))))..)).)))-.. ( -14.50) >DroYak_CAF1 398 107 + 1 ACCACCUGUAAACCACCUGCUG-----------AGUACCUGGUUACAGCUGA-AACCAGCAGUCCUACAAACAGU-GAAACAAACUGCGUAUUACCAAGGCAACAUAGCUUAGAAGUUUA ........(((((.....((((-----------.((.(((((((((.((((.-...))))...........((((-.......)))).)))..))).)))..)).))))......))))) ( -21.80) >consensus ACCACCUGUUAACCACCUGUUA___________ACUACCUGGAUACACCUGUUAACCACCAAACCAACAAACACUGUAAACAAACUCCAUAUUACCAAGGCAACAUAGCUUAGAUGUUAA .........................................................................................................((((......)))). ( -0.34 = -0.58 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:38 2006