Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,500,253 – 5,500,363 |
Length | 110 |
Max. P | 0.928858 |
Location | 5,500,253 – 5,500,363 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 98.55 |
Mean single sequence MFE | -19.39 |
Consensus MFE | -19.39 |
Energy contribution | -19.39 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 1.00 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5500253 110 + 27905053 GCACCUGCAAAAUGUCGCCCUGGUCCUCCUCCUCAUCAUCAUCAUCACUACUGCCCCCUUCGGCUCGCAUGGCCAGAACAUGCUCCACCAACUUUUUCUUUUGCACGAAC ...(.(((((((........((((............................(((......)))..(((((.......)))))...))))........))))))).)... ( -19.39) >DroSec_CAF1 30887 110 + 1 GCACCUGCAAAAUGUCGCCCUGGUCCUCCUCCUCAUCAUCAUCAUCACUACUGCCCCCUUCGGCUCGCAUGGCCAGAACAUGCUCCACCAACUUUUUCUUUUGCACGAAC ...(.(((((((........((((............................(((......)))..(((((.......)))))...))))........))))))).)... ( -19.39) >DroSim_CAF1 33124 110 + 1 GCACCUGCAAAAUGUCGCCCUGGUCCUCCUCCUCAUCAUCAUCAUCACUACUGCCCCCUUCGGCUCGCAUGGCCAGAACAUGCUCCACCAACUUUUUCUUUUGCACGAAC ...(.(((((((........((((............................(((......)))..(((((.......)))))...))))........))))))).)... ( -19.39) >DroEre_CAF1 31170 110 + 1 GCACCUGCAAAAUGUCGCCCUGGUCCUCCUCCUCCUCUUCAUCAUCACUACUGCCCCCUUCGGCUCGCAUGGCCAGAACAUGCUCCACCAACUUCUUCUUUUGCACGAAC ...(.(((((((........((((............................(((......)))..(((((.......)))))...))))........))))))).)... ( -19.39) >DroYak_CAF1 29596 110 + 1 GCACCUGCAAAAUGUCGCCCUGGUCCUCCUCCUCCUCAUCAUCAUCACUACUGCCCCCUUCGGCUCGCAUGGCCAGAACAUGCUCCACCAACUUCUUCUUUUGCACGAAC ...(.(((((((........((((............................(((......)))..(((((.......)))))...))))........))))))).)... ( -19.39) >consensus GCACCUGCAAAAUGUCGCCCUGGUCCUCCUCCUCAUCAUCAUCAUCACUACUGCCCCCUUCGGCUCGCAUGGCCAGAACAUGCUCCACCAACUUUUUCUUUUGCACGAAC ...(.(((((((........((((............................(((......)))..(((((.......)))))...))))........))))))).)... (-19.39 = -19.39 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:37 2006