Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,495,554 – 5,495,662 |
Length | 108 |
Max. P | 0.581232 |
Location | 5,495,554 – 5,495,662 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 82.64 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -16.68 |
Energy contribution | -17.84 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.31 |
Mean z-score | -2.07 |
Structure conservation index | 0.56 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5495554 108 - 27905053 AGUUCCAAAUCCAAUGGUAGAGCACAGAUCUCUUGGAAUAGAAAGGAGAAAGGAAUCCCCUUUGGG-GGUUUCUGCUGUCAACAUGAAUUCACUACCAUUUCAGGACAU .........(((((((((((.(.((((.((((((.........)))))).((((((((((...)))-))))))).)))))....((....))))))))))...)))... ( -33.40) >DroSec_CAF1 26292 108 - 1 AGUUCCAAAUCCAAUGGUAGAGCACAGAUCUCUUGAAAUAGAAAGGAGAAAGAGAUCCCCCUUGGG-GGUUUCUGCUGUCAACAUGAAUUCACUACCAUUCCAGGACAU .........(((((((((((.(.((((.((((((.........)))))).((((((((((...)))-))))))).)))))....((....))))))))))...)))... ( -34.00) >DroSim_CAF1 28471 109 - 1 AGUUCAAAAUCCAAUGGUAGAGCACAGAUCUCUUGAAAUAGAAAGGAGAAAGGGAUCCCCUUUGGGGGGUCUCUGCUGUCAACAUGAAUUCACUCCCAUUCCAGGACAU .........((((((((.((.(.((((.((((((.........)))))).((((((((((....)))))))))).)))))....((....)))).)))))...)))... ( -33.00) >DroEre_CAF1 26473 107 - 1 AGUUCCAAAUCCAAUUGUAGAGCACAAAUCCUUCGGAGUAGAACAGAGAAAGAAAUCCCCUGUGGG-GGCUCCU-UUGUCAACGUGCAUUUACUAUCCUUCCAGGACAU .((((...........(((((((((.....(....).........((.((((.(..((((...)))-)..).))-)).))...)))).)))))..........)))).. ( -25.70) >DroYak_CAF1 24897 99 - 1 AGUAC------CAGUUGUAGAGUACAGAA--AUAGAAAUAGAAAGGAGUAAGGGAUGCCCUGUGGG-GGCUCCU-CUGUCAACAUGAAUUCACUCCCAUUUCAGGACAU .((.(------(..(((((...)))))..--.........(((((((((.(((((.((((.....)-)))))).-)).((.....))....)))))..)))).)))).. ( -23.90) >consensus AGUUCCAAAUCCAAUGGUAGAGCACAGAUCUCUUGAAAUAGAAAGGAGAAAGGGAUCCCCUUUGGG_GGUUUCUGCUGUCAACAUGAAUUCACUACCAUUCCAGGACAU .((((.......((((((((.(.((((.((((((.........)))))).((((((((((...))).))))))).)))))....((....))))))))))...)))).. (-16.68 = -17.84 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:36 2006