Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,495,194 – 5,495,314 |
Length | 120 |
Max. P | 0.509331 |
Location | 5,495,194 – 5,495,314 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.89 |
Mean single sequence MFE | -45.54 |
Consensus MFE | -36.17 |
Energy contribution | -35.92 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.15 |
Mean z-score | -2.28 |
Structure conservation index | 0.79 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5495194 120 - 27905053 CACGGGCAUUGCGAAGGGCGUGGCGCAGUGGAGCAGCGGCAAAGAUCCGCCGGUGCGUACCGCCCCACUGAAUAGCUUCGCAAUGUUCUCCAAAAUCUUGUCUUACCAACCGCAGCAAGU ...(((((((((((((..(((((.((.(((..(((.((((........)))).))).))).)).)))).).....)))))))))))))........(((((.............))))). ( -44.32) >DroVir_CAF1 36165 120 - 1 CACGGGCAUUGCGAAGGGUGUGGCGCAAUGGACUAGCGGCAAGGAUCCGCCGGUUCGUACCACACCGCUAAAUAGCUUCGCAAUGUUCACAAAAAUCUUGUCUUACCAACCGCAGCAAGU ...((((((((((((.(((((((....((((((..((((.......))))..)))))).)))))))(((....)))))))))))))))........(((((.............))))). ( -47.12) >DroGri_CAF1 30626 120 - 1 CACGGGCAUUGCGAAGGGUGUGGCGCAGUGGACUAGCGGCAAGGAUCCGCCGGUUCGUACCACACCGCUAAAUAGCUUCGCAAUGUUCUCAAAAAUCUUGUCUUACCAACCGCAGCAAGU ...((((((((((((.(((((((..(...((((..((((.......))))..)))))..)))))))(((....)))))))))))))))........(((((.............))))). ( -46.52) >DroWil_CAF1 30255 120 - 1 CACGGGCAUUGCGAAGGGCGUGGCUCAGUGGAGCAGCGGCAAAGAACCGCCGGUGCGUACCGCCCCACUCAAUAGCUUCGCAAUGUUCUCCAAAAUCUUGUCUUACCAACCGCAGCAAGU ...(((((((((((((.(.((((....((((.(((.((((........)))).)))...)))).)))).).....)))))))))))))........(((((.............))))). ( -43.62) >DroMoj_CAF1 36218 120 - 1 CACGGGCAUUGCGAAGGGUGUGGCGCAGUGGACCAGCGGCAAGGAUCCGCCGGUUCGUACCACACCGUUAAAUAGCUUCGCAAUGUUCUCAAAAAUCUUGUCUUACCAACCGCAGCAAGU ...((((((((((((((((((((..(...(((((.((((.......)))).))))))..))))))).........)))))))))))))........(((((.............))))). ( -45.82) >DroAna_CAF1 28837 120 - 1 CACGGGCAUUGCGAAGGGCGUGGCGCAGUGGAGCAGCGGCAAAGAUCCGCCGGUGCGUACAGGGCCACUGAAUAGCUUCGCAAUGUUCUCCAAAAUCUUGUCUUACCAACCGCAGCAAGU ...(((((((((((((..((((((.(.(((..(((.((((........)))).))).))).).))))).).....)))))))))))))........(((((.............))))). ( -45.82) >consensus CACGGGCAUUGCGAAGGGCGUGGCGCAGUGGACCAGCGGCAAAGAUCCGCCGGUGCGUACCACACCACUAAAUAGCUUCGCAAUGUUCUCAAAAAUCUUGUCUUACCAACCGCAGCAAGU ...((((((((((((((((((((..(.(.....)..((((........))))....)..))))))).((....)))))))))))))))........(((((.............))))). (-36.17 = -35.92 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:35 2006