Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,484,365 – 5,484,485 |
Length | 120 |
Max. P | 0.519697 |
Location | 5,484,365 – 5,484,485 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.94 |
Mean single sequence MFE | -49.38 |
Consensus MFE | -42.35 |
Energy contribution | -42.35 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.18 |
Mean z-score | -1.47 |
Structure conservation index | 0.86 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5484365 120 - 27905053 CAUGUGGCCUUCUGCUUCUCGCCCGUGGGCGAGACGUUCCGGUCCAGGGUGCAGCGCUUCCCCGCCUUGGUCUCCGGCUGCACCAUUGACUGGCUGCAUCCGUGGCCCAAGGAUGCAUUG .....((((....((.(((((((....))))))).))...((((...((((((((((......))..(((...)))))))))))...))))))))((((((.........)))))).... ( -52.10) >DroVir_CAF1 22839 120 - 1 CAUGUGGCAUUUUGUUUCUCGCCAGUGGGUGAGACAUUUAGGUCGCGGGUGCAGCGUUUUCCCGCCUUGGUCUCCGGCUGCACCAUCGAUUGGCUGCAUCCGUGGCCCAAGGACGCAUUG .(((((...(((((..(((((((....)))))))......(((((((((((((((........(((.........))).....((.....)))))))))))))))))))))).))))).. ( -48.60) >DroGri_CAF1 16424 120 - 1 CAUGUGGCAUUCUGUUUCUCGCCGGUGGGCGAGACAUUCCGUUCGCGGGUGCAGCGCUUUCCCGCCUUGGUCUCCGGCUGCACCAUCGAUUGGCUGCAUCCGUGGCCCAAGGACGCAUUG .(((((((...((((.(((((((....)))))))...((((....)))).)))).)).......((((((.(..(((.(((((((.....))).)))).)))..).)))))).))))).. ( -50.00) >DroWil_CAF1 16449 120 - 1 CACGUGGCAUUCUGCUUUUCACCAGUGGGAGAGACGUUCCGGUCUCGGGUGCAACGCUUUCCCGCCUUGGUCUCCGGAUGCACCAUCGACUGGCUGCACCCGUGGCCCAAGGAUGCCUUG .....((((((((...........(((((((((.(((((((....))))....))))))))))))..(((.(..(((.(((((((.....))).)))).)))..).)))))))))))... ( -50.00) >DroMoj_CAF1 22741 120 - 1 CACGUAGCUUUUUGUUUCUCACCUGUGGGAGAGACAUUUAGAUCGCGGGUGCAGCGCUUUCCCGCCUUGGUCUCCGGCUGCACCAUCGAUUGGCUGCAUCCGUGGCCCAAGGACGCAUUG ...(...((...((((((((.((...))))))))))...))..)(((((.((...))...)))(((((((.(..(((.(((((((.....))).)))).)))..).)))))).))).... ( -45.60) >DroAna_CAF1 16396 120 - 1 CACGUGGCCUUCUGCUUCUCGCCCGUAGGUGAGACGUUCCGGUCGCGAGUGCAGCGCUUCCCCGCCUUGGUCUCCGGCUGCACCAUUGACUGGCUGCAUCCGUGGCCCAAGGACGCCUUG ..(((((((....((.(((((((....))))))).))...)))))))((((...))))....((((((((.(..(((.(((((((.....))).)))).)))..).)))))).))..... ( -50.00) >consensus CACGUGGCAUUCUGCUUCUCGCCAGUGGGAGAGACAUUCCGGUCGCGGGUGCAGCGCUUUCCCGCCUUGGUCUCCGGCUGCACCAUCGACUGGCUGCAUCCGUGGCCCAAGGACGCAUUG ......((.((((((.(((((((....))))))).))...(((((((((((((((((......))...((((...((.....))...)))).)))))))))))))))..)))).)).... (-42.35 = -42.35 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:24 2006