Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 854,776 – 854,896 |
Length | 120 |
Max. P | 0.863577 |
Location | 854,776 – 854,896 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.39 |
Mean single sequence MFE | -37.75 |
Consensus MFE | -30.04 |
Energy contribution | -30.98 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.19 |
Mean z-score | -2.15 |
Structure conservation index | 0.80 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 854776 120 + 27905053 GGGUGUUUUGCUCCACGAUAUGGUGUGAACUUAUUGUGAAUGGCCAUUCAUCGCAGCAGUAGAGUUCGAAGCUCUCAAAAGCAUCGUAUGUGGUAAUUUACAAUGUGCAAAGUUUUUCAU (((..(((((((((((......))).))...((((((((((.(((((....((..((...(((((.....))))).....))..))...))))).)))))))))).))))))...))).. ( -29.60) >DroSec_CAF1 30062 120 + 1 GGUUGUUUUGCCGCACGAUGUGGUGUGAACUCAUUGUGAAUGGCCAUUCAUCGCAGCAGUAGAGUUCGAAGCUCUUAAGAGCUUCGUAUUCGGUAAUUUACAAUGUGCAAAGUUCCUCAU ((...(((((((((((......)))))....((((((((((.(((.......((....)).((((.((((((((....)))))))).))))))).)))))))))).))))))..)).... ( -42.90) >DroSim_CAF1 29065 120 + 1 GGGUGUUUUGCCGCACGAUGUGGUGUGAACUCAUUGUGAAUGGCCAUUCAUCGCAGCAGUAGAGUUCGAAGCUCUUAAGAGCUUCGUAUUCGGUAAUUUACAAUGUGCAAAGUUCCUCAU (((..(((((((((((......)))))....((((((((((.(((.......((....)).((((.((((((((....)))))))).))))))).)))))))))).))))))..)))... ( -45.20) >DroEre_CAF1 30279 120 + 1 GGGUGUUUUGCUGCAAGAUGUGGUGUGAACUUAUUGCGAAUGGCCAUUCAUCGCAGCAGUAGAGUUUGAAGCGCUUAAGAGCUUCGUAUUCAGUAAUUUACAGUGUCCAAAGCUCCUCAU (((.((((((((((.....(..(((......)))..)((((....))))...)))))....((((.((((((........)))))).)))).................))))).)))... ( -33.30) >consensus GGGUGUUUUGCCGCACGAUGUGGUGUGAACUCAUUGUGAAUGGCCAUUCAUCGCAGCAGUAGAGUUCGAAGCUCUUAAGAGCUUCGUAUUCGGUAAUUUACAAUGUGCAAAGUUCCUCAU (((.((((((((((((......)))))....((((((((((.(((.......((....)).((((.((((((((....)))))))).))))))).)))))))))).))))))).)))... (-30.04 = -30.98 + 0.94)
Location | 854,776 – 854,896 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.39 |
Mean single sequence MFE | -28.22 |
Consensus MFE | -22.24 |
Energy contribution | -22.93 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.13 |
Mean z-score | -1.55 |
Structure conservation index | 0.79 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 854776 120 - 27905053 AUGAAAAACUUUGCACAUUGUAAAUUACCACAUACGAUGCUUUUGAGAGCUUCGAACUCUACUGCUGCGAUGAAUGGCCAUUCACAAUAAGUUCACACCAUAUCGUGGAGCAAAACACCC .........(((((..(((((.(((..((((((.((..((.....((((.......))))...))..)))))..)))..))).)))))...(((((........))))))))))...... ( -21.60) >DroSec_CAF1 30062 120 - 1 AUGAGGAACUUUGCACAUUGUAAAUUACCGAAUACGAAGCUCUUAAGAGCUUCGAACUCUACUGCUGCGAUGAAUGGCCAUUCACAAUGAGUUCACACCACAUCGUGCGGCAAAACAACC ..(((....(((((.....)))))..........((((((((....))))))))..)))...((((((.((((.(((..((((.....)))).....)))..))))))))))........ ( -32.30) >DroSim_CAF1 29065 120 - 1 AUGAGGAACUUUGCACAUUGUAAAUUACCGAAUACGAAGCUCUUAAGAGCUUCGAACUCUACUGCUGCGAUGAAUGGCCAUUCACAAUGAGUUCACACCACAUCGUGCGGCAAAACACCC ..(((....(((((.....)))))..........((((((((....))))))))..)))...((((((.((((.(((..((((.....)))).....)))..))))))))))........ ( -32.30) >DroEre_CAF1 30279 120 - 1 AUGAGGAGCUUUGGACACUGUAAAUUACUGAAUACGAAGCUCUUAAGCGCUUCAAACUCUACUGCUGCGAUGAAUGGCCAUUCGCAAUAAGUUCACACCACAUCUUGCAGCAAAACACCC ...((((((((((......(((...)))......))))))))))..................(((((((((((((.((.....)).....))))).........))))))))........ ( -26.70) >consensus AUGAGGAACUUUGCACAUUGUAAAUUACCGAAUACGAAGCUCUUAAGAGCUUCGAACUCUACUGCUGCGAUGAAUGGCCAUUCACAAUAAGUUCACACCACAUCGUGCAGCAAAACACCC ..(((....(((((.....)))))..........((((((((....))))))))..)))...((((((((((..(((......((.....)).....)))))))..))))))........ (-22.24 = -22.93 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:58 2006