Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,483,544 – 5,483,656 |
Length | 112 |
Max. P | 0.980468 |
Location | 5,483,544 – 5,483,656 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 83.10 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -18.76 |
Energy contribution | -18.64 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -1.62 |
Structure conservation index | 0.67 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5483544 112 + 27905053 AGUUAAGAAAUAAAUUACAAAUUAAGCAGUGGAGGAAGUUAUUCAAUAUAGUAAGUUGUGCGAUCGCACAGGAGCAUUGCUCCUGGAUCAUACUAC-AUUUAGACUAU---CCUCC ..............................((((((((((....(((.(((((....((((....))))((((((...))))))......))))).-)))..)))).)---))))) ( -28.90) >DroSec_CAF1 14419 112 + 1 AGUUAAGAAAUAAAUUACAAAUUAAGCAGUGGAGGAAGUUUUUCCAUAUAGUAAGUUGUGCGAUCGUACAGGAGCAUUGCUCCUGGAUCAUACUAC-AUUUGGACUAU---CCUCC ..............................((((((((....((((..(((((.(.....)((((...(((((((...))))))))))).))))).-...)))))).)---))))) ( -28.50) >DroSim_CAF1 16645 115 + 1 AGUUAAGAAAUAAAUUACAAAUUAAGCAGUGGAGGAAGUUUUUCAAUAUAGUAAGUUGUGCGAAAGUACAGGAGCAUUGCUCCUGGAUCAUACUAC-AUUUAGUCAAUAUGGCUCC ..............................((((..............(((((....((((....))))((((((...))))))......)))))(-((.........))).)))) ( -22.40) >DroEre_CAF1 14381 96 + 1 AGUUGGGAAAUGAGUUACAGAUUAAGCAGUGGAGGA-----------------AGAUGUGGGAUCCUAGAGGAGCAUUGCUCCUGGAUCAUACUACCAUUUAGACUAG---CCUCC .(((((.(((((..(((((..((...(....)...)-----------------)..)))))(((((...((((((...))))))))))).......)))))...))))---).... ( -24.80) >DroYak_CAF1 12877 112 + 1 AGUUAAGGAAUGAAUUGCAUAUUAAGCAGUGGAGGAAGUUUGUCAAUAUAGUAAGAUGUGGGAUCCCACUGGAGCAUUGCUCCUGGGUCAUACUAC-AUUUAGACUAG---CCUCC .............(((((.......)))))(((((.((((((..(((.(((((.(((((((....)))).(((((...)))))...))).))))).-)))))))))..---))))) ( -34.40) >consensus AGUUAAGAAAUAAAUUACAAAUUAAGCAGUGGAGGAAGUUUUUCAAUAUAGUAAGUUGUGCGAUCGUACAGGAGCAUUGCUCCUGGAUCAUACUAC_AUUUAGACUAU___CCUCC ..............................(((((......................((((....))))((((((...))))))...........................))))) (-18.76 = -18.64 + -0.12)
Location | 5,483,544 – 5,483,656 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 83.10 |
Mean single sequence MFE | -29.45 |
Consensus MFE | -16.55 |
Energy contribution | -18.04 |
Covariance contribution | 1.49 |
Combinations/Pair | 1.04 |
Mean z-score | -3.41 |
Structure conservation index | 0.56 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5483544 112 - 27905053 GGAGG---AUAGUCUAAAU-GUAGUAUGAUCCAGGAGCAAUGCUCCUGUGCGAUCGCACAACUUACUAUAUUGAAUAACUUCCUCCACUGCUUAAUUUGUAAUUUAUUUCUUAACU (((((---(.(((...(((-((((((.(....((((((...))))))((((....))))..).))))))))).....))))))))).............................. ( -34.10) >DroSec_CAF1 14419 112 - 1 GGAGG---AUAGUCCAAAU-GUAGUAUGAUCCAGGAGCAAUGCUCCUGUACGAUCGCACAACUUACUAUAUGGAAAAACUUCCUCCACUGCUUAAUUUGUAAUUUAUUUCUUAACU (((((---(...((((..(-((((((((((((((((((...)))))))...))))).......)))))))))))......)))))).............................. ( -33.21) >DroSim_CAF1 16645 115 - 1 GGAGCCAUAUUGACUAAAU-GUAGUAUGAUCCAGGAGCAAUGCUCCUGUACUUUCGCACAACUUACUAUAUUGAAAAACUUCCUCCACUGCUUAAUUUGUAAUUUAUUUCUUAACU ((((............(((-(((((((((..(((((((...))))))).....))).......)))))))))..........)))).............................. ( -21.06) >DroEre_CAF1 14381 96 - 1 GGAGG---CUAGUCUAAAUGGUAGUAUGAUCCAGGAGCAAUGCUCCUCUAGGAUCCCACAUCU-----------------UCCUCCACUGCUUAAUCUGUAACUCAUUUCCCAACU (((((---..((......(((......(((((((((((...))))))...))))))))...))-----------------.))))).............................. ( -23.00) >DroYak_CAF1 12877 112 - 1 GGAGG---CUAGUCUAAAU-GUAGUAUGACCCAGGAGCAAUGCUCCAGUGGGAUCCCACAUCUUACUAUAUUGACAAACUUCCUCCACUGCUUAAUAUGCAAUUCAUUCCUUAACU (((((---..(((...(((-((((((.((....(((((...))))).((((....)))).)).))))))))).....))).)))))..(((.......)))............... ( -35.90) >consensus GGAGG___AUAGUCUAAAU_GUAGUAUGAUCCAGGAGCAAUGCUCCUGUACGAUCGCACAACUUACUAUAUUGAAAAACUUCCUCCACUGCUUAAUUUGUAAUUUAUUUCUUAACU (((((..................((.((((((((((((...)))))))...))))).))......(......)........)))))..(((.......)))............... (-16.55 = -18.04 + 1.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:22 2006