Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,474,534 – 5,474,628 |
Length | 94 |
Max. P | 0.592407 |
Location | 5,474,534 – 5,474,628 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 89.79 |
Mean single sequence MFE | -26.96 |
Consensus MFE | -19.78 |
Energy contribution | -20.70 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.08 |
Mean z-score | -1.73 |
Structure conservation index | 0.73 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5474534 94 - 27905053 ACAAAUUGAAAUGGAAGUGGGGUAAGCCCGGUUCUCCCUUAUCCCCAUGGAUUUUCCAUGUACUUUUCCCGGCAAAGGGAAAGCUAAACUAGAU ..........((((((((((((((((...((....)))))).)))))).....))))))....(((((((......)))))))........... ( -25.70) >DroSec_CAF1 5373 94 - 1 ACAAAUUGAAAUGGAAGUGGGGUAAGCCCGGUUUUCCCUUAUCCCCAUGGGUUUCCCAUGUACUUUUCCCGGCAAAGGGAAAGCUAAACUAGAU ...............(((.(((....)))(((((((((((...((((((((...))))))..........))..)))))))))))..))).... ( -26.70) >DroSim_CAF1 5487 94 - 1 ACAAAUUGAAAUGGAAGUGGGGUAAGCCCGGUUUUCCCUUAUCCCCAUGGGUUUGCCAUGUACUGUUCCCGGCAAAGGGAAAGCUAAACUAGAU ...............(((.(((....)))(((((((((((..(((...)))..((((.............)))))))))))))))..))).... ( -26.62) >DroEre_CAF1 5278 94 - 1 ACAAAUUGCAAUGGAAGUGGGGCUAACCCACUUUUUCCUUAUCCCCAUGGGUUUCCCAUGCACUUUUCCCGGCAAAGGGAAAGCCAAACUAGAU .......((...(((((((((.....))))))...))).......((((((...))))))....((((((......)))))))).......... ( -28.60) >DroYak_CAF1 3651 93 - 1 ACAAAUUGCAAGGGAAGUGGGGUAAACACGGUUUUCCCCUUUCCCCCUGGGUUUUC-UUGUACUUUUUCCGGCAAGGGGAAAGCUAAACUAGAU ......((((((..((..((((.((((...)))).))))...(((...)))))..)-)))))((((..((.....))..))))........... ( -27.20) >consensus ACAAAUUGAAAUGGAAGUGGGGUAAGCCCGGUUUUCCCUUAUCCCCAUGGGUUUCCCAUGUACUUUUCCCGGCAAAGGGAAAGCUAAACUAGAU ...............(((.(((....)))(((((((((((...(((((((.....)))))..........))..)))))))))))..))).... (-19.78 = -20.70 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:20 2006