Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,473,994 – 5,474,085 |
Length | 91 |
Max. P | 0.607493 |
Location | 5,473,994 – 5,474,085 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 84.80 |
Mean single sequence MFE | -22.86 |
Consensus MFE | -16.24 |
Energy contribution | -15.88 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.27 |
Mean z-score | -1.71 |
Structure conservation index | 0.71 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5473994 91 - 27905053 GGGGAUUCAAUGUCUAACUCGUAAGUUCGGGUGACAUUGCAUUUUUCCCUUUAUAUUUUUGGCCAUGUGAAAGUCUAUUUUCAUCUGCUGG (((((..(((((((..(((((......)))))))))))).....))))).........(..((...(((((((....)))))))..))..) ( -25.30) >DroSec_CAF1 4840 91 - 1 GGGGAUUCAAUGUCCAACUCGUAAGUUUGGGUGACAUUGCAUUUUUGCCUUUUUAUUUUUGGCAAUGUGAAAGUCUAUUUUCCUCUGCUGG (((((..(((((((..(((((......))))))))))))(((..(((((...........))))).)))...........)))))...... ( -24.30) >DroSim_CAF1 4942 91 - 1 GGGGAUUCAAUGUCUAGCUCGUAAGUUCGGGUGACAUUGCAUUUUUCCCUUUUCAUUUUUGGCCAUGUGAAAGUCUAUUUUCCUCUGCUGG (((((..(((((((..(((((......)))))))))))).....))))).........(..((...(.(((((....))))))...))..) ( -23.30) >DroEre_CAF1 4734 89 - 1 GGGGAUUCAAUGUCCUACUCGUAAGUUGAGGUGACAUUGCAUUCUUACUACU--UUUUUUGGCCAUCUGAAAGUCCACUUUCCUCUGCUUU ((((((.(((((((...((((.....))))..))))))).))))))......--......(((.....(((((....)))))....))).. ( -21.60) >DroYak_CAF1 3128 89 - 1 GGGGAUUCAAUGUCUUACUCGUAAGAACAGGUGGCAUUGCAUUUCUACGUUU--AUUAUUGGGCAUCUGAAAGUCCACUUUUCUCUGCUGG ((..((.(((((((....((....))......))))))).))..))......--.......((((...(((((....)))))...)))).. ( -19.80) >consensus GGGGAUUCAAUGUCUAACUCGUAAGUUCGGGUGACAUUGCAUUUUUACCUUU__AUUUUUGGCCAUGUGAAAGUCUAUUUUCCUCUGCUGG ((((((.(((((((..(((((......)))))))))))).))))))..............(((.....(((((....)))))....))).. (-16.24 = -15.88 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:19 2006