Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,466,879 – 5,466,993 |
Length | 114 |
Max. P | 0.998743 |
Location | 5,466,879 – 5,466,970 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 83.22 |
Mean single sequence MFE | -26.04 |
Consensus MFE | -19.08 |
Energy contribution | -19.32 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.73 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5466879 91 - 27905053 UCCCAUUUGAUUAGGCCGUAAAA--AAAUCAGCACAAAAGGCCAAUCAUUUGGGAAUCUGCAGCUCAGGGGUGG-----AGCAAAGAAAAUUACCAGG (((((..(((((.((((......--..............)))))))))..))))).(((...((((.......)-----)))..)))........... ( -27.15) >DroSec_CAF1 6971 97 - 1 UCCCAUUUGAUUAGGCCGUAAAAA-AAAUCAGCACAAAAGGCCAAUAAUUUGGGAAUCUGCAGCGCAGGGGAGGUGGGUGGCAAAGAAAAUUACCAGG (((((....(((.((((.......-..............)))))))....))))).(((((...)))))...(((((.............)))))... ( -21.72) >DroEre_CAF1 6213 88 - 1 UCCCAUUUGAUUAGGCCGUAAAA--AAAUCAGCACAAAAGGCCAAUCAUUUGGGAAUCUGU--------GGCCCGGGGGAGCAAAGAAAAUUACAAGG (((((..(((((.((((......--..............)))))))))..))))).(((.(--------(.((....))..)).)))........... ( -25.85) >DroYak_CAF1 5664 98 - 1 UCCCAUUUGAUUGGGCCGUAAAAAGAAAUCAGCACAAAAGGCCAAUCAUUUGGGAAUCUGGCGACCAGGCGCCCAGGGGAGCAAACGAAAUUACAAGG (((((..(((((((.((......................)))))))))..)))))..((((...))))((.((....)).))................ ( -29.45) >consensus UCCCAUUUGAUUAGGCCGUAAAA__AAAUCAGCACAAAAGGCCAAUCAUUUGGGAAUCUGCAGC_CAGGGGCCC_GGGGAGCAAAGAAAAUUACAAGG (((((..(((((.((((......................)))))))))..)))))........................................... (-19.08 = -19.32 + 0.25)
Location | 5,466,900 – 5,466,993 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 64.70 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -14.46 |
Energy contribution | -16.78 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.11 |
Mean z-score | -3.04 |
Structure conservation index | 0.46 |
SVM decision value | 3.21 |
SVM RNA-class probability | 0.998743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5466900 93 - 27905053 C-----------------UGGCCGCUUUAAAGGCCGUAAAUCCCAUUUGAUU-AGGCCGUAAAA---AAAUCAGCACAAAAGGCCAAUCAUUUGGGAAUCUGC------AGCUCAGGGGU .-----------------.((((........))))(((..(((((..(((((-.((((......---..............)))))))))..)))))...)))------.(((....))) ( -30.85) >DroSec_CAF1 6997 109 - 1 CCUCUGGCUG--CCUGACUGGCCGCUUUAAAGGCCGUAAAUCCCAUUUGAUU-AGGCCGUAAAAA--AAAUCAGCACAAAAGGCCAAUAAUUUGGGAAUCUGC------AGCGCAGGGGA ((((((((((--(..((..((((........)))).....(((((....(((-.((((.......--..............)))))))....))))).)).))------))).)))))). ( -42.80) >DroEre_CAF1 6239 81 - 1 C---------------------CGCUUUAAAGGCCGUAAAUCCCAUUUGAUU-AGGCCGUAAAA---AAAUCAGCACAAAAGGCCAAUCAUUUGGGAAUCUGU--------------GGC .---------------------..........((((((..(((((..(((((-.((((......---..............)))))))))..)))))...)))--------------))) ( -24.35) >DroYak_CAF1 5690 111 - 1 CCUCUGGUUGUGUCUUAC-GGCCGCUUUAAAGGCCGUAAAUCCCAUUUGAUU-GGGCCGUAAAAAG-AAAUCAGCACAAAAGGCCAAUCAUUUGGGAAUCUGG------CGACCAGGCGC ..(((((((((...((((-((((........)))))))).(((((..(((((-((.((........-..............)))))))))..))))).....)------))))))))... ( -47.05) >DroAna_CAF1 10104 92 - 1 A---------------------UGCUCUCGUCGGCAUAAAUCAGAUUUUAGUAAUGCCAUAAAACGGAAAUU-----UCAAGGUCAACCAAUUCGUAAAGUAAAUCCCCAGGACAAU--A .---------------------.......((((((((................))))).....(((((....-----))..((....))....)))...............)))...--. ( -11.29) >consensus C__________________GGCCGCUUUAAAGGCCGUAAAUCCCAUUUGAUU_AGGCCGUAAAA___AAAUCAGCACAAAAGGCCAAUCAUUUGGGAAUCUGC______AGC_CAGGGGA ...................((((........)))).....(((((..(((((..((((.......................)))))))))..)))))....................... (-14.46 = -16.78 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:18 2006