Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,459,000 – 5,459,112 |
Length | 112 |
Max. P | 0.790105 |
Location | 5,459,000 – 5,459,112 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 93.10 |
Mean single sequence MFE | -17.25 |
Consensus MFE | -13.77 |
Energy contribution | -13.77 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.80 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.790105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5459000 112 - 27905053 AGCAUCCACUUACAAAUACAAA-AAUUAAAUAGAGCCAACUGUAUAUAUCAUUACGUAAUAAACA--UUACAAUUUGUUCUAUUUUCAACAGUAAAAUAACUGAAAGAUGGUAGU ..((((................-....(((((((((.....(((........)))(((((....)--)))).....)))))))))....((((......))))...))))..... ( -17.30) >DroSec_CAF1 4655 112 - 1 AACAUCCACUUACAAAUACAAA-AAUUAAAUAGAGCCAAGUGUAUAUAUCAUUACGUAAUAAUCA--UUACAAUUUGUUCUAUUUUCAACAGUAAAAUAACUGAAAGAUGGUAGU ..((((................-....(((((((((.(((((((........)))(((((....)--)))).)))))))))))))....((((......))))...))))..... ( -18.50) >DroSim_CAF1 4220 113 - 1 AACAUCCACUUACAAAUACAAAAAAUUAAAUAGAGCCAACUGUAUAUAUCAUUACGUAAUAAACA--UUACAAUUUGUUCUAUUUUCAACAGUAAAAUAACUGAAAGACGGUAGU .....((....................(((((((((.....(((........)))(((((....)--)))).....)))))))))....((((......))))......)).... ( -15.20) >DroEre_CAF1 4502 112 - 1 AACAACCACUUAGAAAUACAAA-AAUGAAAUAGAGCCAACUGUAUAUAUCAUUACGUAAUAAACAUAUUACAAUUUGUUCUAUUUUCAACAGUAAAGUAACUGAGAU--AGUAGU ................(((...-..(((((((((((.....(((........)))((((((....)))))).....)))))).))))).((((......))))....--.))).. ( -18.00) >consensus AACAUCCACUUACAAAUACAAA_AAUUAAAUAGAGCCAACUGUAUAUAUCAUUACGUAAUAAACA__UUACAAUUUGUUCUAUUUUCAACAGUAAAAUAACUGAAAGAUGGUAGU ................(((........(((((((((.....(((........)))((((........)))).....)))))))))....((((......)))).......))).. (-13.77 = -13.77 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:15 2006