Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,454,619 – 5,454,738 |
Length | 119 |
Max. P | 0.910674 |
Location | 5,454,619 – 5,454,738 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -25.53 |
Consensus MFE | -22.77 |
Energy contribution | -23.43 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.58 |
Structure conservation index | 0.89 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5454619 119 + 27905053 AAUCGCUCGAAAAGAGCAAUGGAAA-AAAACAACAAGUUGUAUGUUUAUAAAUUAUAAGUCUUACAAAUUGUAAUUGUGGUUUCCGUUUGCUUAGAACAUCAAAGCAGCUACCAACACAC ....((((.....))))((((((((-...(((((((.(((((.(((((((...)))))).).))))).))))...)))..))))))))(((((.(.....).)))))............. ( -27.20) >DroSim_CAF1 8601 120 + 1 AAUGGCACCAAAAGAGCAUUGGAAAUAAAACAACAAGUUGUAUGUUUAUAAAUUAUAAGUCUUACAAAUUGUAAUUGUGGUUUCCGUUUGCUUAGAACAUCAAAGCAGCUACCAACACAC ..((((.......(((((.(((((((...(((((((.(((((.(((((((...)))))).).))))).))))...))).)))))))..))))).(.....)......))))......... ( -24.30) >DroYak_CAF1 7235 119 + 1 AAACGCC-ACAAAGAGCAAUGGAAAUAAAACAACAAGUUGUAUGUUUAUAAAUUAUAAGUCUUACAAAUUGUAAUUGUGGUUUCCGUUUGCUUAGAACAUCAAAGCAGCUACCAACACAC .......-......((((((((((((...(((((((.(((((.(((((((...)))))).).))))).))))...))).)))))))))(((((.(.....).)))))))).......... ( -25.10) >consensus AAUCGCACAAAAAGAGCAAUGGAAAUAAAACAACAAGUUGUAUGUUUAUAAAUUAUAAGUCUUACAAAUUGUAAUUGUGGUUUCCGUUUGCUUAGAACAUCAAAGCAGCUACCAACACAC ..............((((((((((((...(((((((.(((((.(((((((...)))))).).))))).))))...))).)))))))))(((((.(.....).)))))))).......... (-22.77 = -23.43 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:12 2006