Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,454,464 – 5,454,583 |
Length | 119 |
Max. P | 0.842268 |
Location | 5,454,464 – 5,454,583 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.49 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -20.44 |
Energy contribution | -21.67 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.46 |
Structure conservation index | 0.73 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842268 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5454464 119 - 27905053 CCACGUGAACA-AAUCACGGCCGAAUGGCAACGCUGUCUAUAUCGUCGUGUCUACAUCGAAUUUUGAUUUACAGAAAAACGGUGUUGCCACUCCAAAUGGUUUUCAAAGUGCUGUUCGAA ...(((((...-..)))))..((((((((((((((((.....(((..((....))..))).(((((.....)))))..)))))))))))...((....)).............))))).. ( -31.80) >DroSim_CAF1 8442 119 - 1 CCACGUGAACA-AAUCACGGCCAAAUGGCAACGCUGUCUACAUCGUCGUGUCUACAUCGAUUUUUGAUUUACACAAAAACGGAGUUGCCACUCCAAAUGGUUUUCAAAUUGCUGUUCGAA ((((((((...-..)))))......(((((((.((((.......((((((....)).))))(((((.......))))))))).))))))).......))).................... ( -26.10) >DroYak_CAF1 7097 98 - 1 CCACGUGAACAAAAUCACGGCGAGUUGGCAACGCU------ACAAUCGGGUCUAUAUCGAAUUUCGA-----ACGAAAGCGGUGCUGCCACUCAAAAUGUUAUUCAAAA----------- ...(((((......)))))..((((.((((.(((.------.(..((((.......)))).((((..-----..)))))..))).))))))))................----------- ( -26.40) >consensus CCACGUGAACA_AAUCACGGCCAAAUGGCAACGCUGUCUA_AUCGUCGUGUCUACAUCGAAUUUUGAUUUACACAAAAACGGUGUUGCCACUCCAAAUGGUUUUCAAAAUGCUGUUCGAA ...(((((......)))))......((((((((((((........(((.........))).(((((.......))))))))))))))))).............................. (-20.44 = -21.67 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:11 2006