Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 851,050 – 851,163 |
Length | 113 |
Max. P | 0.982805 |
Location | 851,050 – 851,163 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.41 |
Mean single sequence MFE | -45.03 |
Consensus MFE | -34.50 |
Energy contribution | -35.56 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.00 |
Mean z-score | -2.66 |
Structure conservation index | 0.77 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.982805 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 851050 113 + 27905053 UGGGCUGGGGGCUUAGGACUUGG-------GACUUGGGCCUUGGGAUUUUGGAGUGAAUGGGAUAAGCUCACGCACUGCCACGCCCCCGGCCCCGAAAAUGUUAUUUUAACUACAUUUCG .(((((((((((......((..(-------(........))..))....(((((((..((((.....))))..)))).))).)))))))))))(((((.(((..........)))))))) ( -46.70) >DroSec_CAF1 26723 113 + 1 CGGGCUGGGGGCUUAGGACUUGG-------GACUUGGGCCUUGGGACUUCGGAGUGAAUGGGCUAAGCUCACGCACUGCCACGCCCCCGGCCCCAAAAAUGUUAUUUUAACUACAUUUCG .(((((((((((..((..((.((-------(.(....)))).))..))..((((((..(((((...)))))..)))).))..)))))))))))...((((((..........)))))).. ( -48.80) >DroSim_CAF1 25944 120 + 1 CGGGCUGGGGGCUUAGGACUUGGGACUUGGGACUUGGGCCUUGGGACUUCGGAGUGAAUGGGCUAAGCUCACGCACUGCCACGCCCCCGGCCCCAAAAAUGUUAUUUUAACUACAUUUCG .(((((((((((..((..((.(((.((..(...)..))))).))..))..((((((..(((((...)))))..)))).))..)))))))))))...((((((..........)))))).. ( -51.40) >DroEre_CAF1 27511 91 + 1 UGGGCUGGG----------------------------GCAUUGGGAC-UCGAAGUGAAUGGGCUAAGCUCACGCACUGCCACGCCCCCGGCCCCAAAAAUGUUAUUUUAACUACAUUUCG .((((((((----------------------------(.....((..-....((((..(((((...)))))..)))).))....)))))))))...((((((..........)))))).. ( -33.20) >consensus CGGGCUGGGGGCUUAGGACUUGG_______GACUUGGGCCUUGGGACUUCGGAGUGAAUGGGCUAAGCUCACGCACUGCCACGCCCCCGGCCCCAAAAAUGUUAUUUUAACUACAUUUCG .((((((((((((((((...............))))))))).(((.....(.((((..((((.....))))..)))).)....))))))))))...((((((..........)))))).. (-34.50 = -35.56 + 1.06)
Location | 851,050 – 851,163 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.41 |
Mean single sequence MFE | -37.25 |
Consensus MFE | -30.77 |
Energy contribution | -31.90 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.68 |
Structure conservation index | 0.83 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 851050 113 - 27905053 CGAAAUGUAGUUAAAAUAACAUUUUCGGGGCCGGGGGCGUGGCAGUGCGUGAGCUUAUCCCAUUCACUCCAAAAUCCCAAGGCCCAAGUC-------CCAAGUCCUAAGCCCCCAGCCCA ((((((((.((....)).))).)))))((((.((((((.(((.((((.(((.........))).))))))).........(((....)))-------...........)))))).)))). ( -37.90) >DroSec_CAF1 26723 113 - 1 CGAAAUGUAGUUAAAAUAACAUUUUUGGGGCCGGGGGCGUGGCAGUGCGUGAGCUUAGCCCAUUCACUCCGAAGUCCCAAGGCCCAAGUC-------CCAAGUCCUAAGCCCCCAGCCCG .(((((((.((....)).)))))))..((((.((((((.(((.((((.(((.((...)).))).)))))))..(((....))).......-------...........)))))).)))). ( -38.40) >DroSim_CAF1 25944 120 - 1 CGAAAUGUAGUUAAAAUAACAUUUUUGGGGCCGGGGGCGUGGCAGUGCGUGAGCUUAGCCCAUUCACUCCGAAGUCCCAAGGCCCAAGUCCCAAGUCCCAAGUCCUAAGCCCCCAGCCCG .(((((((.((....)).)))))))..((((.((((((.(((.((((.(((.((...)).))).)))))))..(((....))).........................)))))).)))). ( -38.40) >DroEre_CAF1 27511 91 - 1 CGAAAUGUAGUUAAAAUAACAUUUUUGGGGCCGGGGGCGUGGCAGUGCGUGAGCUUAGCCCAUUCACUUCGA-GUCCCAAUGC----------------------------CCCAGCCCA .(((((((.((....)).)))))))..((((..((((((((((...((....))...))).((((.....))-))....))))----------------------------))).)))). ( -34.30) >consensus CGAAAUGUAGUUAAAAUAACAUUUUUGGGGCCGGGGGCGUGGCAGUGCGUGAGCUUAGCCCAUUCACUCCGAAGUCCCAAGGCCCAAGUC_______CCAAGUCCUAAGCCCCCAGCCCA .(((((((.((....)).)))))))..((((.((((((.(((.((((.(((.((...)).))).)))))))..(((....))).........................)))))).)))). (-30.77 = -31.90 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:56 2006