Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,451,218 – 5,451,334 |
Length | 116 |
Max. P | 0.625316 |
Location | 5,451,218 – 5,451,334 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 86.72 |
Mean single sequence MFE | -34.14 |
Consensus MFE | -28.92 |
Energy contribution | -30.60 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.04 |
Mean z-score | -1.49 |
Structure conservation index | 0.85 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5451218 116 - 27905053 UUGUGUGCAUUGUACCCAUUAUAUAUACCUUUACCAUUCCAUACGCAGUGUGCCAAUGAGGCAGGCCUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU (((.((((....................................((((((..(((....((..((....))..))....)))..))))))(((((......))))))))))))... ( -33.20) >DroSec_CAF1 5168 115 - 1 UUGUGUCCAUUGUACACAUUA-AUAUACCUAUAUCAUUCCAUACGCAGUGUGCCAAUGAGGCAGGCUUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU ..((((((......((((((.-((((....))))..........(((((.((((.....)))).)).))).....))))))((((.(((......))).).)))))))))...... ( -33.20) >DroSim_CAF1 5124 116 - 1 UUGUGUCCAUUGUACCCAUUAUAUAUACCUUUAUCAUUCCAUACGCAGUGUGCCAAUGAGGCGGGCUUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU ..((((((....................................((((((..(((....((.(((....))).))....)))..))))))..(((......)))))))))...... ( -35.30) >DroEre_CAF1 3829 96 - 1 --------------------GUACCUAAAUAUAUCUUUCCACACGCAGUGUGCCAAUGAGGCGGGCCUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU --------------------..........................((((..(((....((.(((....))).))....)))..))))(((((((......)))))))........ ( -29.60) >DroYak_CAF1 3693 116 - 1 UUGUGCCCAUUAUGCCCAUUAUAUGUACCUAUAUCAUUCCACACGCAGUGUGCCAAUGAGGCGGGCCUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU ..((((((.((.(((.....(((((....)))))......(((.((((((..(((....((.(((....))).))....)))..)))))).)))...))).)).))))))...... ( -39.40) >consensus UUGUGUCCAUUGUACCCAUUAUAUAUACCUAUAUCAUUCCAUACGCAGUGUGCCAAUGAGGCGGGCCUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU ..((((((....................................((((((..(((....((.(((....))).))....)))..))))))..(((......)))))))))...... (-28.92 = -30.60 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:08 2006