Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,448,767 – 5,448,921 |
Length | 154 |
Max. P | 0.884447 |
Location | 5,448,767 – 5,448,881 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 76.98 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -12.98 |
Energy contribution | -13.12 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.13 |
Mean z-score | -2.41 |
Structure conservation index | 0.44 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5448767 114 + 27905053 AUGCUCCUCUUCUUGCAGUGAUUACUAUUUAAAACAUGCUCAAUAUA----UUCAAAUAUAUAUUUUAUGUUGCAGGAAAACCUGGAGAGCGCUUUGCGCGAAUUUAAGCGCGAGAAA ..((((..(((((((((((....)))......((((((...((((((----(......))))))).))))))))))))).....)..))))..(((((((........)))))))... ( -30.00) >DroSec_CAF1 2714 114 + 1 AUGCUCCUCUUCCUCCAGAGAUUAAUAUUUAAAUCAUAAUGGAUGUA----UUCAAAUAUAUAUUUUAUUUUCCAGGAAAACCUAGAGAGCGCUUUGCGCGAAUUUAAGCGCGAGAAA ..((((.(((...(((...((((........)))).....(((((((----(......)))))))).........)))......)))))))..(((((((........)))))))... ( -24.40) >DroSim_CAF1 2661 114 + 1 AUGCUCCUCAUCCUGCAGAGAUUACUAUUUAAAUCAUAAUGGAUGUA----UUCAAAUAUAUAUUUUAUUUUGCAGGAAAACCUGGAGAGCGCUUUGCGCGAAUUUAAGCGCGAGAAA ..((((..(((((((((((((((........)))).....(((((((----(......))))))))...))))))))).....))..))))..(((((((........)))))))... ( -35.00) >DroEre_CAF1 1383 113 + 1 AUGC-UCUAUUCCCGCAGAGAUUAUUAUUUAAAUCAGUUUGGAUAUA----UUCUAAAGUGUAUUCUGUUUUGCAGGAAAACCUGGAGAGCGCUUUGCGCGAAUUUAAGCGUGAGAAA ((((-(..((((.(((((((..............((.((((((....----.)))))).))......(((((.((((....)))).))))).))))))).))))...)))))...... ( -34.70) >DroYak_CAF1 1218 114 + 1 AUCCAUCUGUUCCUGCAGAGAUUAUUAUUUUACUCAUUUUGGAUAUA----UUCUAAAGUACAUUGUAUUUUGCAGGAAAACCUGGAGAGCGCUUUGCGCGAAUUUAAGCGUGAGAAA .((((....((((((((((((.((......)).))((((((((....----.)))))))).........))))))))))....))))......((..(((........)))..))... ( -32.10) >DroAna_CAF1 1395 98 + 1 ----------------AGGAUCUACUCCUU----GUUUUUGGAUCUAACAUUACUAAUGGAGCAAUCAUUUUCCAGGAGAACCUCGAGAGCGCUUUGCGUGAAUUUAAGCGCGAGAAA ----------------.(((((((......----.....))))))).......((..(((((........)))))..))...(((....((((((...........)))))))))... ( -20.10) >consensus AUGCUCCUCUUCCUGCAGAGAUUACUAUUUAAAUCAUUUUGGAUAUA____UUCAAAUAUAUAUUUUAUUUUGCAGGAAAACCUGGAGAGCGCUUUGCGCGAAUUUAAGCGCGAGAAA ....................................................................((((.((((....)))).))))...(((((((........)))))))... (-12.98 = -13.12 + 0.14)
Location | 5,448,807 – 5,448,921 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 73.88 |
Mean single sequence MFE | -28.58 |
Consensus MFE | -18.64 |
Energy contribution | -19.00 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.25 |
Mean z-score | -1.43 |
Structure conservation index | 0.65 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5448807 114 - 27905053 CGGCGUUGGCCAAACUCAAGCGAGCGUUUUGCUUCAGAAUUUUCUCGCGCUUAAAUUCGCGCAAAGCGCUCUCCAGGUUUUCCUGCAACAUAAAAUA-UAUAUUUGAA----UAUAUUG .(((....)))........(((((((((((((....((......))(((........))))))))))))))...(((....))))).......((((-(((......)----)))))). ( -32.50) >DroVir_CAF1 11210 103 - 1 CGGCAUUUGCCAGGCUGAGACGCGCAUUUUGUUUCAGAAUUUUCUCACGCUUAAAUUCCCGCAAUGCGCUCUCCAAAUUAUCCUGCAAAUGAAUAAC---------------AACAGC- ...(((((((.(((..((((.((((((..(((....((((((..........))))))..)))))))))))))........))))))))))......---------------......- ( -25.20) >DroPse_CAF1 19264 104 - 1 CAGCGUUGGCCAGGCUGAGACGAGCGUUUUGCUUAAGAAUUUUCUCUCGCUUAAAUUCACGCAAAGCGCUCUCCAGGUUCUCCUGCAAGAUUCGAAG---------------AAGGUCA ......(((((...((..((.(((((((((((....((((((..........))))))..)))))))))))..((((....))))......))..))---------------..))))) ( -31.80) >DroWil_CAF1 858 104 - 1 CCGCGUUGGCUAAACUGAGACGAGCGUUUUGCUUUAGAAUUUUCUCACGUUUAAAUUCACGCAAAGCACUUUCAAGAUUCUCCUACAAAAAAAAAGAAGAUAUU--------------- ....((.((..((.((..((.(((.(((((((....((((((..........))))))..))))))).))))).)).))..)).))..................--------------- ( -15.80) >DroAna_CAF1 1415 118 - 1 CGGCAUUGGCCAGGCUGAGGCGAGCGUUUUGCUUCAGAAUUUUCUCGCGCUUAAAUUCACGCAAAGCGCUCUCGAGGUUCUCCUGGAAAAUGAUUGC-UCCAUUAGUAAUGUUAGAUCC ...((((..(((((..(((.((((((((((((....((((((..........))))))..)))))))))))....).))).)))))..))))(((((-(.....))))))......... ( -36.20) >DroPer_CAF1 19465 104 - 1 CAGCGUUGGCCAGGCUGAGACGAGCGUUUUGCUUAAGAAUUUUCUCUCGCUUAAAUUCACGCAAAGCGCUCUCCAGGUUCUCCUGCAAGAUUCGAAG---------------AAGAUCA ....((.((..((.(((.((.(((((((((((....((((((..........))))))..)))))))))))))))).))..)).))..((((.....---------------..)))). ( -30.00) >consensus CGGCGUUGGCCAGGCUGAGACGAGCGUUUUGCUUCAGAAUUUUCUCACGCUUAAAUUCACGCAAAGCGCUCUCCAGGUUCUCCUGCAAAAUAAAAAA_______________AAGAUC_ ..(((..((...((((..((.(((((((((((....((((((..........))))))..)))))))))))))..))))..)))))................................. (-18.64 = -19.00 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:07 2006