| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,445,081 – 5,445,194 |
| Length | 113 |
| Max. P | 0.745355 |
| Location | 5,445,081 – 5,445,194 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.68 |
| Mean single sequence MFE | -17.15 |
| Consensus MFE | -13.17 |
| Energy contribution | -13.17 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5445081 113 - 27905053 AAUCAUACCUAUAAGAAAAGUACACUUUGUAUGCCUUCACUUGGCAAAAAAAAAGAAAAGAAAAAUAAAAAUAAAAGUGAUCAAAAUCAUGCAAAGAGCGUAAUGAGGAAGUG .......(((.........((...((((((.((((.......))))..............................(((((....))))))))))).))......)))..... ( -15.06) >DroEre_CAF1 32283 105 - 1 AAUCAUACCUAUAGGAAAAGUACACUUUGAAUGCCUUCACUUGGCAAAAAAAGGGGGAAAAAU--------GAGGAGUGAACAAAAUCAUGCAAAAAGCGUAAUGAGGAAGUG .......(((.........((.((((((..((.(((((..((......))..)))))....))--------..)))))).))......((((.....))))....)))..... ( -17.80) >DroYak_CAF1 32918 100 - 1 ----------AUAAGAAAAGCACACUUUGUGUGCCUUCACUUGGCAAAAAAAAGGGAAAAAGACUU---GGCAAAAGUGAACACAAUCAUGCAAAAAGCGUAAUGAGGAAGUG ----------............((((((.((((..(((((((.((......(((.........)))---.))..)))))))))))...((((.....))))......)))))) ( -18.60) >consensus AAUCAUACCUAUAAGAAAAGUACACUUUGUAUGCCUUCACUUGGCAAAAAAAAGGGAAAAAAA__U_____CAAAAGUGAACAAAAUCAUGCAAAAAGCGUAAUGAGGAAGUG ......................((((((...((((.......))))..........................................((((.....))))......)))))) (-13.17 = -13.17 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:01 2006