Locus 1923

Sequence ID 3R_DroMel_CAF1
Location 5,444,028 – 5,444,133
Length 105
Max. P 0.842853
window3160

overview

Window 0

Location 5,444,028 – 5,444,133
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.83
Mean single sequence MFE -18.79
Consensus MFE -17.76
Energy contribution -17.76
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.95
SVM decision value 0.76
SVM RNA-class probability 0.842853
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5444028 105 - 27905053
AUGUUUACUUAGUGUGGGCCCCACUCGCACAUCAAUAUCAAUUUAGCCAUGCUCCUCUGUGUGUGGUUUUCCAACCUCCCCCCC-------------CCU--UCCACUUUACCUCCCCUC
...........(((((((.....)))))))..............((((((((........))))))))................-------------...--.................. ( -17.50)
>DroSec_CAF1 30495 90 - 1
AUGUUUACUUAGUGUGGGCCCCACUCGCACAUAAAUAUCAAUUUAGCCAUGCUCCUCUGUGUGUGGUUUUCCAACCUGACCCCC-------------C-----------------UCCCC
(((((((....(((((((.....))))))).)))))))......((((((((........))))))))................-------------.-----------------..... ( -17.80)
>DroSim_CAF1 25703 90 - 1
AUGUUUACUUAGUGUGGGCCCCACUCGCACAUAAAUAUCAAUUUAGCCAUGCUCCUCUGUGUGUGGUUCUCCAACCUGACCCCC-------------C-----------------UCCCC
(((((((....(((((((.....))))))).)))))))......((((((((........))))))))................-------------.-----------------..... ( -17.80)
>DroEre_CAF1 31209 104 - 1
AUGUUUACUUAGUGUGGGCCCCGCUCGCACAUAAAUAUCAAUUUAGCCAUGCUCCUCUGUGUGUGGUUUUCCAACCUGUGCCCC-------------CCUUCUCCGCUUU---UCCGCUC
(((((((....((((((((...)))))))).)))))))......((((((((........))))))))................-------------........((...---...)).. ( -20.90)
>DroYak_CAF1 31821 117 - 1
AUGUUUACUUAGUGUGGGCCCCACUCGCACAUAAAUAUCAAUUUAGCCAUGCUCCUCCGUGUGUGGUUUUCCCCCCUGUGCGCCCCCCCCCCCCCUCCCCUUUCCGCUUU---UCCCCUU
..........((.(.(((.......(((((((((((....)))))(((((((........))))))).........)))))).......))).)))..............---....... ( -19.94)
>consensus
AUGUUUACUUAGUGUGGGCCCCACUCGCACAUAAAUAUCAAUUUAGCCAUGCUCCUCUGUGUGUGGUUUUCCAACCUGACCCCC_____________CC___UCC_CUUU___UCCCCUC
...........(((((((.....)))))))..............((((((((........)))))))).................................................... (-17.76 = -17.76 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:55 2006