Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,442,689 – 5,442,780 |
Length | 91 |
Max. P | 0.952358 |
Location | 5,442,689 – 5,442,780 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.02 |
Mean single sequence MFE | -16.82 |
Consensus MFE | -15.10 |
Energy contribution | -15.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.90 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5442689 91 + 27905053 -----------------------AGAG-----AGAAGAAUUACGCAGGCAUAUAAAAAAUAUAUAAUUUGUAAAACAAAAACCUGCUGCGGCUACUUCAACUCAAUUAGCCCAACUACA -----------------------....-----...........(((((.(((((.....)))))..((((.....))))..)))))((.(((((.((......)).)))))))...... ( -15.50) >DroSim_CAF1 24349 114 + 1 GCCAGAAAUUUCAAUACAAAAGGAGAG-----AGAAGAAUUACGCAGGCAUAUAAAAAAUAUAUAAUUUGUAAAACAAAAACCUGCUGCGGCUACUCCAACUCAAUUAGCCCAACUACA ((......((((..........)))).-----...........(((((.(((((.....)))))..((((.....))))..))))).))(((((............)))))........ ( -15.30) >DroEre_CAF1 29886 98 + 1 -----------CA-----AAACGAAAG-----AGCAGUAUUACGCAGGCAUAUAAAAAAUAUAUAAUUUGUAAAACAAAAACCUGCUGCGGCUACUUCAACUCAAUUAGCCCAACUACA -----------..-----...(....)-----....(((....(((((.(((((.....)))))..((((.....))))..)))))((.(((((.((......)).)))))))..))). ( -17.70) >DroYak_CAF1 30438 119 + 1 GCAAGAAAUUUCAAUACAAAACGAAAGAGAAGAGAAGAAUUACGCAGGCAUAUAAAAAAUAUAUAAUUUGUAAAACAAAAACCUGCUGCGGCUACUUCAACUCAAUUAGCCCAACUACA (((..................(....)................(((((.(((((.....)))))..((((.....))))..))))))))(((((.((......)).)))))........ ( -18.80) >consensus ___________CA_____AAACGAAAG_____AGAAGAAUUACGCAGGCAUAUAAAAAAUAUAUAAUUUGUAAAACAAAAACCUGCUGCGGCUACUUCAACUCAAUUAGCCCAACUACA ...........................................(((((.(((((.....)))))..((((.....))))..)))))((.(((((............)))))))...... (-15.10 = -15.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:54 2006