Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,441,392 – 5,441,512 |
Length | 120 |
Max. P | 0.956554 |
Location | 5,441,392 – 5,441,512 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.14 |
Mean single sequence MFE | -32.47 |
Consensus MFE | -27.36 |
Energy contribution | -27.12 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.11 |
Mean z-score | -1.84 |
Structure conservation index | 0.84 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5441392 120 - 27905053 GCCCGAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAAGCCGGACUUAUAAGCCAAAUGUUUGUGAGAAAGCCUUUCCCUGGAGCAACGAAAAAAUCUAAAAUAUAUAUGU (((...))).......((((.(((.((((.........(((((....))))).(((((((((.....))))))))).......)))).)))..))))....................... ( -30.50) >DroSec_CAF1 27869 119 - 1 GCCCAAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAAGCCGGACUUAUAAGCCAACUGUUUGUGAGAAAGCGUUUCCCUGGAGCAACGAA-AAAUCUAAAAUAUAUAUGU (((...))).......((((.(((.((((..((.....(((((....))))).(((((((((.....))))))))).....)))))).)))..))))...-................... ( -30.60) >DroSim_CAF1 23034 119 - 1 GCCCGAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAAGCCGGACUUAUAAGCCAAAUGUUUGUGAGAAAGCGUUUCCCUGGAGCAACGAA-AAAUCUAAAGUAUAUAUGU (((...))).......((((.(((.((((..((.....(((((....))))).(((((((((.....))))))))).....)))))).)))..))))...-................... ( -30.60) >DroEre_CAF1 28526 119 - 1 GCCCGGGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAUGCCGGAUUUAUAGACCGAAUGUUUGUGAGAAAGCGUUUGCCUGGGGCAACGAA-AAAUCUAAAAUAUAUAUGU ((((.(((((((...(((((............))))).(((((....)))))........)))((((((((......)))))))))))).))))......-................... ( -36.40) >DroYak_CAF1 29034 119 - 1 GCCCGAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAUGGCGGACUUAUAGACCGAAUGUUUGUGAGAAAGCGUUUCCCUGGGGCAACGAA-AAAUCUAAAAUAUACAUGU ((((.(((((((..(((((.(((((((...............))).)))).)))))....))))(((((((......)))))))..))).))))......-................... ( -34.26) >consensus GCCCGAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAAGCCGGACUUAUAAGCCAAAUGUUUGUGAGAAAGCGUUUCCCUGGAGCAACGAA_AAAUCUAAAAUAUAUAUGU (((...))).......((((.(((.((((.........(((((....))))).(((((((((.....))))))))).......)))).)))..))))....................... (-27.36 = -27.12 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:51 2006