Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,441,089 – 5,441,209 |
Length | 120 |
Max. P | 0.561667 |
Location | 5,441,089 – 5,441,209 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -24.34 |
Consensus MFE | -21.74 |
Energy contribution | -21.54 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.28 |
Structure conservation index | 0.89 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5441089 120 - 27905053 AUCAUGACGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGAAAACGUAACAAAAGUCCAAAUA .....(((((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))....(((....))).......)))...... ( -22.80) >DroSec_CAF1 27573 120 - 1 AUCAUGACGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGAAAACGUAACAAAAGUCCAAAUA .....(((((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))....(((....))).......)))...... ( -22.80) >DroSim_CAF1 22742 120 - 1 AUCAUGACGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGAAAACGUAACAAAAGUCCAAAUA .....(((((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))....(((....))).......)))...... ( -22.80) >DroEre_CAF1 28234 120 - 1 AUCAUGAUGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGCAAACGUAACAAAAAUCGAAAUA .((.((.(((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))).))(((....)))..........)).... ( -22.60) >DroYak_CAF1 28731 120 - 1 AUCAUGGCGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGCAAACGUAACAAACAUCGAAAUA .((((((((.((((....))))..))))))))....((((((.((((....(((....))))))).))))))..........((((((......(((....)))......)))))).... ( -30.70) >consensus AUCAUGACGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGAAAACGUAACAAAAGUCCAAAUA .....(((((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))....(((....))).......)))...... (-21.74 = -21.54 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:50 2006