Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,439,694 – 5,439,805 |
Length | 111 |
Max. P | 0.956550 |
Location | 5,439,694 – 5,439,805 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.26 |
Mean single sequence MFE | -24.74 |
Consensus MFE | -19.59 |
Energy contribution | -19.91 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.04 |
Mean z-score | -2.28 |
Structure conservation index | 0.79 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5439694 111 + 27905053 CAAAUUAUCAUUUUGCACAAUCACCUCGAUCACUUCGGUGUCAGACACUCAC-----U----UGUUAAGGGUGUCACCGCCAAACACCUAUGGAUAAUUCAUACAUUCGUACUUGACGAU ..(((((((.(((.((...........((.(((....))))).(((((((..-----.----......)))))))...)).)))((....))))))))).......((((.....)))). ( -23.00) >DroSec_CAF1 26244 108 + 1 CAAAUUAUCAUUUUGCACAAUCACCUCGAUCACUUCGGUGUCAGACACUCAC-----U----UGUUAAGGGUGUCACCGCGAAACACCUAUGGAUAAUUCAUACAUU---ACUUGACGAU ..(((((((.((((((...........((.(((....))))).(((((((..-----.----......)))))))...))))))((....)))))))))........---.......... ( -24.50) >DroSim_CAF1 21404 111 + 1 CAAAUUAUCAUUUUGCACAAUCACCUCGAUCACUUCGGUGUCAGACACUCAC-----U----UGUUAAGGGUGUCACCGCCAAACACCUAUGGAUAAUUCAUACAUUCGUACUUGACGAU ..(((((((.(((.((...........((.(((....))))).(((((((..-----.----......)))))))...)).)))((....))))))))).......((((.....)))). ( -23.00) >DroEre_CAF1 26858 120 + 1 CAAAUUAUCAUUUUGCACAAUCACCUCGAUCACUUCGGUGUCAGACACUCACUUCACUUCUCUGUAAAGGGUGUCACCGCAAAACACCUAUGGAUAAUUCAUUCAUUUGUACUUGACGAU ...((..(((((((((...........((.(((....))))).(((((.(.(((.((......)).)))))))))...)))))).((..((((((.....))))))..))...)))..)) ( -26.80) >DroYak_CAF1 27283 115 + 1 CAAAUUAUCAUUUUGCACAAUCACCUCGAUCACUUCGGUGUCAGACACUCAC-----UUCUCUGUUAAGGGUGUCACCGCAAAACACCUAUGGAUAAUUCAUUCAUUUGUACUUGACGAU ...((..(((((((((...........((.(((....))))).(((((((((-----......))...)))))))...)))))).((..((((((.....))))))..))...)))..)) ( -26.40) >consensus CAAAUUAUCAUUUUGCACAAUCACCUCGAUCACUUCGGUGUCAGACACUCAC_____U____UGUUAAGGGUGUCACCGCAAAACACCUAUGGAUAAUUCAUACAUUCGUACUUGACGAU ..(((((((.((((((.....((((..((.....))))))...(((((((..................)))))))...))))))((....)))))))))..................... (-19.59 = -19.91 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:47 2006