Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,438,841 – 5,438,961 |
Length | 120 |
Max. P | 0.955320 |
Location | 5,438,841 – 5,438,961 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -22.58 |
Energy contribution | -22.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.89 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.955320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5438841 120 + 27905053 UAGUUUUUUGCACAAAAAUUUUCUCACGUAACAAGUACACCAGCCAGACAUGGAUCGGGAAAAACUUUUUCAGAAAACUGAAAAGUCCGACAAGACCGGACCAAGUAAUUUACUACGGCA ((((...((((.......(((((((..(((.....))).(((........)))...)))))))...(((((((....)))))))(((((.......)))))...))))...))))..... ( -26.50) >DroSec_CAF1 25404 110 + 1 ----------CACAAAAAUUUUCUCACGUAACAAGUACACCAGCCAGACAUGGAUCGGGAAAAACUUUUUCAGAAAACUGAAAAGUCCGACAAGACCGGACCAAGUAAUUUACUUCGGCA ----------........(((((((..(((.....))).(((........)))...)))))))...(((((((....)))))))(((((.......))))).(((((...)))))..... ( -21.80) >DroSim_CAF1 20561 120 + 1 UAGUUUUUUGCACAAAAAUUUUCUCACGUAACAAGUACACCAGCCAGACAUGGAUCGGGAAAAACUUUUUCAGAAAACUGAAAAGUCCGACAAGACCGGACCAAGUAAUUUACUUCGGCA .(((...((((.......(((((((..(((.....))).(((........)))...)))))))...(((((((....)))))))(((((.......)))))...))))...)))...... ( -25.00) >DroEre_CAF1 25998 120 + 1 UAGUUUUUUGCACGAAAAUUUUCUCACGUAACAAGUACACCAGCCAGACAUGGGUCGGGAAAAACUUUUUCAGAAAACUGAAAAGUCCGACAAGAGCGGACCAAGUAAUUUACUUCGGCA ........(((.((((..((((((((((((.....))).(((........))))).)))))))((((((((((....)))))).(((((.(....)))))).)))).......))))))) ( -28.20) >DroYak_CAF1 26426 120 + 1 UAGUUUUUUGCACAAAAAUUUUCUCACGUAACAAGUACACCAGCCAGACAUGGAUCGGGAAAAACUUUUUCAGAAAACUGAAAAGUCCGACAAGACCGGACCAAGUAAUUUACUUCGGCA .(((...((((.......(((((((..(((.....))).(((........)))...)))))))...(((((((....)))))))(((((.......)))))...))))...)))...... ( -25.00) >consensus UAGUUUUUUGCACAAAAAUUUUCUCACGUAACAAGUACACCAGCCAGACAUGGAUCGGGAAAAACUUUUUCAGAAAACUGAAAAGUCCGACAAGACCGGACCAAGUAAUUUACUUCGGCA .........((.......(((((((..(((.....))).(((........)))...)))))))((((((((((....)))))).(((((.......))))).))))...........)). (-22.58 = -22.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:43 2006