Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,437,800 – 5,437,920 |
Length | 120 |
Max. P | 0.685598 |
Location | 5,437,800 – 5,437,920 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -19.98 |
Consensus MFE | -15.48 |
Energy contribution | -16.88 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.77 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5437800 120 + 27905053 AUAAUUCAAAAGCAAGUCACUUGACUUAAAUUAAUUCCAUAUUAUUGUGCCAUACAUUUUAAUAAACUUUUUAAUUUGUUGUAGGUAUUUGGCAAUCUUUCCUUCGAAUUAAUUUCAUGC ...........(((((((....)))))((((((((((..........((((((((....(((((((........)))))))...)))..)))))...........))))))))))...)) ( -21.40) >DroSec_CAF1 24518 120 + 1 AUAAUUCAAAAGCAAGUCACUUGACUUAAAUUAAUUCCAUAUUAUUGUGCCAUACAUUUAAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCCUUCGAAUUAAUUUCAUGC ...........(((((((....)))))((((((((((..........((((((((.....((((((........))))))....)))..)))))...........))))))))))...)) ( -20.60) >DroSim_CAF1 19568 120 + 1 AUAAUUCAAAAGCAAGUCACUUGACUUAAAUUAAUUCCAUAUUAUUGUGCCAUACAUUUUAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCCUUCGAAUUAAUUUCAUGC ...........(((((((....)))))((((((((((..........((((((((....(((((((........)))))))...)))..)))))...........))))))))))...)) ( -21.40) >DroEre_CAF1 25036 119 + 1 AUAAUUCAAAAGCCCGUCACUUGACUUAAAAUAAUUCCUUUUU-UUGUGCCAUCCAUUUUAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCCUUCGAAAUAAUUUCAUGC ....(((........(((....)))..................-...(((((.(((...(((((((........))))))).)))....)))))...........)))............ ( -15.70) >DroYak_CAF1 25422 120 + 1 AUAAUUCAAAAGCCAGUCACUUGACUUAAAAUAAUUCCUUUUUAUUGUGCCAUCCAUUUUAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCUUUCGAAUUAAUUUCAUGC .((((((.((((..((((....)))).....................(((((.(((...(((((((........))))))).)))....)))))......)))).))))))......... ( -20.80) >consensus AUAAUUCAAAAGCAAGUCACUUGACUUAAAUUAAUUCCAUAUUAUUGUGCCAUACAUUUUAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCCUUCGAAUUAAUUUCAUGC ...........(((((((....)))))((((((((((..........(((((.......(((((((........)))))))........)))))...........))))))))))...)) (-15.48 = -16.88 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:40 2006