Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,436,047 – 5,436,165 |
Length | 118 |
Max. P | 0.630406 |
Location | 5,436,047 – 5,436,165 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.62 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -21.74 |
Energy contribution | -23.02 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.93 |
Structure conservation index | 0.73 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5436047 118 - 27905053 AUUUUUUUUGUGGUUUGGCUAGUUUGUUCUCCAGAUCAAACGAAUCGCGCAGAUUGGGGAAUAAAGAAGUGAU-UUUU-UUUAUUUUUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA ...((((((((((..((....(((((.((....)).))))).....((((((...((((((((((((((....-))))-)))))))))).))).))).))..))))))))))........ ( -32.70) >DroSec_CAF1 22735 117 - 1 AUUC--UUUGUGGUUUGGCCAGUUUGUUCUCCAGAUCAAACGAAUCACGCAGAUUGGGGGAUAAAGAAGUGAUCUUUU-UUUAUUUUUUGCUGACGCACAUUUCACGAAAACUUAUAGAA ....--(((((((..((((((((.((((((((((.((...((.....))..))))))))))))(((((((((......-.)))))))))))))..)).))..)))))))........... ( -27.90) >DroSim_CAF1 17800 117 - 1 AUUU--UUUGUGGUUUGGCCAGUUUGUUCGCCAGAUCAAACGAAUCGCGCAGAUUGGGGGAUAAAGAAGUGAUCUUUU-UUUAUUUUUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA ((((--(((((((..((....(((((.((....)).))))).....((((((...((((((((((((((.....))))-)))))))))).))).))).))..)))))))))))....... ( -32.40) >DroEre_CAF1 23185 116 - 1 AUUU--UUUGUGGUUUGGCUAGUUUGUUGUCCAGAUCAAACGAAUCGCGCAGAUUGGGGGAUAAAAAAGUGUUUUUUC--UUUUUUGUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA ((((--(((((((..((((((((((((.((...((((....).)))))))))))))((.((((((((((........)--))))))))).))...)).))..)))))))))))....... ( -28.30) >DroYak_CAF1 23621 117 - 1 AUU---UUUGUGGUUUGGCUAGUUUGUUGUCCAGAUCAAACGAAUCGCGUAGUUUGGGGGAUAAAGAAGUUAUUUUUAUUUUUUUUCUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA .((---(((((((..((((((((.((((.(((((((...(((.....))).))))))).))))((((((..(........)..))))))))))..)).))..)))))))))......... ( -26.80) >consensus AUUU__UUUGUGGUUUGGCUAGUUUGUUCUCCAGAUCAAACGAAUCGCGCAGAUUGGGGGAUAAAGAAGUGAUCUUUU_UUUAUUUUUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA ......(((((((..((((((((.(((((((((.(((...((.....))..))))))))))))(((((((((........)))))))))))))..)).))..)))))))........... (-21.74 = -23.02 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:39 2006