Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,434,779 – 5,434,887 |
Length | 108 |
Max. P | 0.524869 |
Location | 5,434,779 – 5,434,887 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.74 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -19.88 |
Energy contribution | -19.36 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.72 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5434779 108 + 27905053 CUCGAUAAGUUCGUGGAUUUCAUUGUUU------------AUAACAAUGCGAAUUUGUCAACGGAAACGAUCUGCGACAUCGGCAGCCACGAGUAGCAAUUGCUAACAUGCAAUGAGUAU (((((((((((((.......((((((..------------...))))))))))))))))..((....))...(((.((.(((.......))))).)))(((((......))))))))... ( -30.31) >DroSec_CAF1 21501 106 + 1 --CGAUAAGUUCGUGGAUUUCAUUGUUU------------AUAACAAUGUGAAUUUGUCAACGGAAACGAUCUGCGACAUCGACAGCCACGAGUAGCAAUUGCUCACAUGCAAUGAGUAU --.......(((((((((((((((((..------------...)))))).))))(((((..((....))......(....)))))))))))))..((.(((((......)))))..)).. ( -26.60) >DroSim_CAF1 16543 106 + 1 --CGAUAAGUUCGUGGAUUUCAUUGUUU------------ACAACAAUGUGAAUUUGUCAACGGAAACGAUCUGCGACAUCGACAGCCACGAGUAGCAAUUGCUCACAUGCAAUGAGUAU --.......(((((((((((((((((..------------...)))))).))))(((((..((....))......(....)))))))))))))..((.(((((......)))))..)).. ( -26.60) >DroEre_CAF1 21971 103 + 1 --CGAUAAGUCAGCGGAUUUCAUUGUUUGGUGAUUGGGCUAUAACAAUGUGAAUUCGUCAACGGAAACGAUCUGCGAC---------------UAACAAUUGCUCACAUGCAAUGAGUAU --.....((((.(((((((((((((((((((......)))).))))))).))))))))...((....))......)))---------------).((.(((((......)))))..)).. ( -28.90) >DroYak_CAF1 22390 103 + 1 --CGAUAAGUCCGCGGAUUUCAUUGUUUCGUGAUUGGGCUUUAACAAUGUGAAUUUGUCAACGGAAACGAUCGGCGAC---------------UAACAAUUGCUCACAUGCAAUGAGUAU --((((...((((((((((((((((((..((......))...))))))).)))))))....))))....))))...((---------------(....(((((......))))).))).. ( -24.90) >consensus __CGAUAAGUUCGUGGAUUUCAUUGUUU____________AUAACAAUGUGAAUUUGUCAACGGAAACGAUCUGCGACAUCG_CAGCCACGAGUAGCAAUUGCUCACAUGCAAUGAGUAU ........(((.((((((..(((((((...............)))))))............((....))))))))))).................((.(((((......)))))..)).. (-19.88 = -19.36 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:37 2006