Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,430,730 – 5,430,821 |
Length | 91 |
Max. P | 0.925634 |
Location | 5,430,730 – 5,430,821 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.51 |
Mean single sequence MFE | -17.14 |
Consensus MFE | -15.96 |
Energy contribution | -15.72 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.38 |
Structure conservation index | 0.93 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5430730 91 + 27905053 AAGUCCUGUCCAAACGCAUUCAAAUGCA-AAAGGUAGAGCAGUCAGGCAGCUAAGGAGCCACUAAAUAAAAUCAUUAAAAAUAAUGAACGCA ..(..(((.((....((((....)))).-...)))))..)......((.(((....)))............((((((....))))))..)). ( -15.10) >DroSec_CAF1 17396 91 + 1 AAGUCCUGUCCAAAGGCAUUCAAAUGCA-AAAGGUAGAGCAGUCGGGCAGCCGAGGAGCCACUAAAUAAAAUCAUUAAAAAUAAUGAACGCA ..(..(((.((....((((....)))).-...)))))..).(.(((((..(....).)))...........((((((....)))))).))). ( -16.90) >DroSim_CAF1 12406 91 + 1 AAGUCCUGUCCAAAGGCAUUCAAAUGCA-AAAGGUAGAGCAGUCAGGCAGCCGAGGAGCCACUAAAUAAAAUCAUUAAAAAUAAUGAACGCA .....(((.((....((((....)))).-...))))).((.....(((..(....).)))...........((((((....))))))..)). ( -16.20) >DroEre_CAF1 17941 88 + 1 AAGUCCUGUCCAAUGGCAUUCAAAUGCA-AAAGGUAGAGCAGCCAGGCAGC---GGAGCCACUAAAUAAAAUCAUUAAAAAUAAUGAACGCA ..(..(((.((....((((....)))).-...)))))..).((..(((...---...)))...........((((((....))))))..)). ( -18.70) >DroYak_CAF1 18303 89 + 1 AAGUCCUGUCCAAUGGCAUUCAAAUGCAGAAAGGUAGAGCAGCCAGGCGGC---GGAGCCACUAAAUAAAAUCAUUAAAAAUAAUGAACGCA ..(..(((.((....((((....)))).....)))))..).((..(((...---...)))...........((((((....))))))..)). ( -18.80) >consensus AAGUCCUGUCCAAAGGCAUUCAAAUGCA_AAAGGUAGAGCAGUCAGGCAGC__AGGAGCCACUAAAUAAAAUCAUUAAAAAUAAUGAACGCA ..(..(((.((....((((....)))).....)))))..).((..(((.........)))...........((((((....))))))..)). (-15.96 = -15.72 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:29 2006