Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,428,445 – 5,428,557 |
Length | 112 |
Max. P | 0.787515 |
Location | 5,428,445 – 5,428,557 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -25.96 |
Consensus MFE | -22.08 |
Energy contribution | -21.80 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.55 |
Structure conservation index | 0.85 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5428445 112 + 27905053 AGUCCGACUCUUUGUUGGAAUGAAAAGGUAGAUGAGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACAGCUUAAACUU ..((((((.....)))))).............(((((((((..(......)..))))......(((((..(((....)))))))).................)))))..... ( -24.40) >DroSec_CAF1 15232 112 + 1 AGUCCGACUCUUUGUUGGCAUGAAAAGGCAGAGGAGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU .(((.(.((((((....((.(....).)).))))))).)))......((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... ( -26.60) >DroSim_CAF1 10212 112 + 1 AGUCCGACUCUUUGUUGGCAUGCAAAGGCAGAGGAGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU .(((.(..((((((((.(....)...))))))))..).)))......((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... ( -26.30) >DroEre_CAF1 15622 112 + 1 AGUCCGACUCUUUGUUGGAAUGAAAACGCAGAAGGGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU .((((...(((.((((........)))).))).))))..........((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... ( -24.60) >DroYak_CAF1 15941 112 + 1 AGUCCGACUCUUUGUUGGAAUGAAAAAGCAAAGGGGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU .(((.(.(((((((((..........))))))))).).)))......((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... ( -27.90) >consensus AGUCCGACUCUUUGUUGGAAUGAAAAGGCAGAGGAGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU .(((.(.(((((((((..........)))))).)))).)))......((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... (-22.08 = -21.80 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:25 2006