Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,427,705 – 5,427,820 |
Length | 115 |
Max. P | 0.539427 |
Location | 5,427,705 – 5,427,820 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 88.51 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -23.70 |
Energy contribution | -23.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.82 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5427705 115 - 27905053 UGCAAGUGGGUGGCGCCCAUUGAGGAACCAAUGGCGACGAGAACCAGUCGCAACUGGAUCAACAACACAGCCAUCUAAAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA ((((..((((((((.....(((..((.(((...(((((........)))))...))).))..)))....)))))))).........(((.....)))........))))...... ( -32.20) >DroSec_CAF1 14515 102 - 1 UGCAAGUGGGUGGCGCCCAUUGAGGAACU-UUGGCGACGAGAACCAGCCACAACUGGAUC------------AUCUACAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA ((((.((.((((...(((((((.......-(((....)))((.((((......)))).))------------...........)))))))..))))...))....))))...... ( -26.70) >DroSim_CAF1 9497 102 - 1 UGCAAGUGGGUGGCGCCCAUUGAGGAACU-UUGGCGACGAGAACCAGCCACAACUGGAUC------------AUCUACAAACACAAUGGGCAUACUAAGGCAAUGUGCAGUAAUA ((((.((.((((..((((((((.......-(((....)))((.((((......)))).))------------...........)))))))).))))...))....))))...... ( -29.50) >DroEre_CAF1 14922 113 - 1 UGCAAGUGGGUGGCGCCCAUUGAGGAACU-UUGGCGACGCCGACCAGCAACAACUGGAUCAACAACAUAGCCA-CUAAAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA ((((.((.((((...(((((((.(.....-.(((((....)((((((......)))).)).........))))-.......).)))))))..))))...))....))))...... ( -28.52) >DroYak_CAF1 15205 113 - 1 UGCAAGUGGGUGGCGCCCAUUGAGGAACU-UUGGCGACGACAACCAGCAACAACUGGAUCAACAACAUAGCCA-CUAAAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA ((((.((.((((...(((((((.(.....-.(((((....)..((((......))))............))))-.......).)))))))..))))...))....))))...... ( -26.92) >consensus UGCAAGUGGGUGGCGCCCAUUGAGGAACU_UUGGCGACGAGAACCAGCCACAACUGGAUCAACAACA_AGCCAUCUAAAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA ((((.((.((((...(((((((.........((....))....((((......))))..........................)))))))..))))...))....))))...... (-23.70 = -23.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:24 2006