Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 849,187 – 849,387 |
Length | 200 |
Max. P | 0.754663 |
Location | 849,187 – 849,307 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -26.96 |
Energy contribution | -27.53 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.82 |
Structure conservation index | 0.91 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664153 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 849187 120 - 27905053 AGACUCAGAUGAGGUUCGGAGUAUUGAAACUGGAACUCGUCAUUGUUAUGCAUAUUGUACAAUUGUUAUGUGAAAUUUAUAUUGUACACACACAAUACCUUCGAUUGUCUGAGCUACUUC ((.((((((..(...(((((((((((.(((..((.....))...)))........((((((((....((.....))....))))))))....))))).)))))))..))))))))..... ( -28.70) >DroSec_CAF1 24878 120 - 1 AGACUCUGAUGAGGUUCGGUGUAUUGAAACUGGAACUCGUCAUUGUUAUGCAUAUUGUACAAUUGUUAUGUGAAAUUUAUAUUGUACACACACAAUACCUUCGAUUGUCUGAGCUACUUC .(((..(((((((.((((((........)))))).)))))))..)))..((....((((((((....((.....))....))))))))((.(((((.......))))).)).))...... ( -29.70) >DroSim_CAF1 24109 120 - 1 AGACUCUGAUGAGGUUCGGUGUAUUGAAACUGGAACUCGUCAUUGUUAUGCAUAUUGUACAAUUGUUAUGUGAAAUUUAUAUUGUACACACACAAUACCUUCGAUUGUCUGAGCUACUUC .(((..(((((((.((((((........)))))).)))))))..)))..((....((((((((....((.....))....))))))))((.(((((.......))))).)).))...... ( -29.70) >DroEre_CAF1 25860 120 - 1 AGACUUUGAUGAGGCUCGGUGUAUUGAAACUGGAACUCGUCAUUGUUAUGCAUAUUGUACAAUUGUUAUGUGAAAUUUAUAUUGUGCACACACAAUACAUUCGAUUGUCUGAGCUACUUC .(((..(((((((..(((((........)))))..)))))))..)))..((....((((((((....((.....))....))))))))((.(((((.......))))).)).))...... ( -30.30) >consensus AGACUCUGAUGAGGUUCGGUGUAUUGAAACUGGAACUCGUCAUUGUUAUGCAUAUUGUACAAUUGUUAUGUGAAAUUUAUAUUGUACACACACAAUACCUUCGAUUGUCUGAGCUACUUC .(((..(((((((.((((((........)))))).)))))))..)))..((....((((((((....((.....))....))))))))((.(((((.......))))).)).))...... (-26.96 = -27.53 + 0.56)
Location | 849,267 – 849,387 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -40.62 |
Consensus MFE | -37.74 |
Energy contribution | -38.30 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.02 |
Mean z-score | -1.65 |
Structure conservation index | 0.93 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 849267 120 - 27905053 CUCAGUUCGGCUGAGUUUGGAUCAGUUGGGCUUCUGUCGAGUUGGUCUCCACCGGAACACUUGUGUUCUUUGUUGGGCCCAGACUCAGAUGAGGUUCGGAGUAUUGAAACUGGAACUCGU ..........((((((((((((((..(.(((....))).)..)))))((((.(((((((....))))))..).))))..)))))))))(((((.(((((..........))))).))))) ( -38.50) >DroSec_CAF1 24958 120 - 1 UUCAGUUCGGCUGAGUUUGGAUCAGUUGGGCUUCUGUCGAGUUGGUCUCCACCGGAACACUUGUGUUCUUUGUUGGGCCCAGACUCUGAUGAGGUUCGGUGUAUUGAAACUGGAACUCGU ...(((((((((((.......)))))))))))...((((((((((.(((.((.((((((....))))))..)).))).))).)))).)))(((.((((((........)))))).))).. ( -41.00) >DroSim_CAF1 24189 120 - 1 UUCAGUUCGGCUGAGUUUGGAUCAGUUGGGCUUCUGUCGAGUUGGUCUCCACCGGAACACUUGUGUUCUUUGUUGGGUCCAGACUCUGAUGAGGUUCGGUGUAUUGAAACUGGAACUCGU ...(((((((((((.......)))))))))))...((((((((((.(((.((.((((((....))))))..)).))).))).)))).)))(((.((((((........)))))).))).. ( -42.10) >DroEre_CAF1 25940 120 - 1 UUCAGUUCGGCUGAGUCUGUUUCAGUUGGGCUUCUGUCGAGUUGGUCUCAACCGGAACACUUGUGUUCUUUGUUGUGCCCAGACUUUGAUGAGGCUCGGUGUAUUGAAACUGGAACUCGU (((((((((((((((.....)))))))(((((((.((((((((((.(.((((.((((((....))))))..)))).).))).)).))))))))))))........).)))))))...... ( -40.90) >consensus UUCAGUUCGGCUGAGUUUGGAUCAGUUGGGCUUCUGUCGAGUUGGUCUCCACCGGAACACUUGUGUUCUUUGUUGGGCCCAGACUCUGAUGAGGUUCGGUGUAUUGAAACUGGAACUCGU ...(((((((((((.......)))))))))))...((((((((((.(((.((.((((((....))))))..)).))).))).)))).)))(((.((((((........)))))).))).. (-37.74 = -38.30 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:44 2006