Locus 19

Sequence ID 3R_DroMel_CAF1
Location 189,911 – 190,018
Length 107
Max. P 0.595257
window34

overview

Window 4

Location 189,911 – 190,018
Length 107
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 74.30
Mean single sequence MFE -35.15
Consensus MFE -23.67
Energy contribution -22.57
Covariance contribution -1.11
Combinations/Pair 1.32
Mean z-score -1.04
Structure conservation index 0.67
SVM decision value 0.12
SVM RNA-class probability 0.595257
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 189911 107 - 27905053
CACCACAGUGGCCAGUUCAGGAGCCGAGCUUCCGGCAGCCAUAAACGUGGCUCCCGCAACAUCUGGCGAUAGCUUUAGCUCUUAAAUGGAA-----UAAACAAACGAGUGAC-
(((.....((.(((....((((((.(((((..(((.((((((....)))))).))((........)))..)))))..))))))...)))..-----....)).....)))..- ( -30.30)
>DroVir_CAF1 24684 113 - 1
CACCACGGUGGCCAGCUCCGGUGCUGAGCUGCCGGCGGCCAUAAAUGUUGCGCCCGCCACGUCCGGCGAUAGCUUGAGCUCUGCAAGGAAUUUGUAUAAAUGAAAUGCCAGCG
.....((.((((....(((..(((.(((((.(.((((((((.......)).)))((((......))))...))).)))))).))).))).((..(....)..))..)))).)) ( -39.30)
>DroGri_CAF1 23752 108 - 1
CACCACAGUGGCCAGCUCGGGCGCAGAGCUGCCGGCGGCCAUGAAUGUGGCACCUGCCACAUCCGGUGACAGCUUUAGCUCUGCAAAUAGUUUU-AUUUAUAAAUGGA----U
..(((.....(((......)))(((((((((..(((......(.(((((((....))))))).)(....).))).)))))))))..........-.........))).----. ( -39.60)
>DroEre_CAF1 26143 106 - 1
CACCACAGUAGCCAGCUCAGGUGCCGAGCUUCCGGCGGCCAUAAACGUGGCUCCCGCGACAUCUGGCGAUAGCUUUAGCUCUAAAAUGUAA------AAACAAGCGAGUAAC-
....(((.(((..((((.(((((((((...(((((.((((((....)))))).))).))..)).)))....)))).)))))))...)))..------...............- ( -28.60)
>DroYak_CAF1 25026 105 - 1
CACCACAGUGGCCAGCUCAGGUGCCGAGCUGCCGGCAGCCAUAAACGUGGCUCCCGCUACAUCUGGCGAUAGCUUUAGCUCUAAAUUGUAA------AAACAA-CGAGAAUC-
(.(((..(((((((((((.(....)))))))..((.((((((....)))))).)))))))...))).)...((....))(((...((((..------..))))-..)))...- ( -32.30)
>DroMoj_CAF1 26632 112 - 1
GACAACGGUGGCCAGCUCUGGAGCUGAGCUGCCGGCGGCCAUAAAUGUGGCGCCCGCCACAUCCGGUGACAGCUUAAGCUCUGCAACGACUCAG-ACUGAUGAAGGACUUAAA
.....(((..(((((((....))))).))..)))((.(.(((..(((((((....)))))))...))).).))(((((..((.((.((......-..)).)).))..))))). ( -40.80)
>consensus
CACCACAGUGGCCAGCUCAGGUGCCGAGCUGCCGGCGGCCAUAAACGUGGCUCCCGCCACAUCCGGCGAUAGCUUUAGCUCUGAAAUGAAA_____UAAACAAACGAGUAAC_
.......((.((((((((.......)))))(.(((..(((((....)))))..))).)......))).))(((....)))................................. (-23.67 = -22.57 +  -1.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:22 2006