Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 189,911 – 190,018 |
Length | 107 |
Max. P | 0.595257 |
Location | 189,911 – 190,018 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.30 |
Mean single sequence MFE | -35.15 |
Consensus MFE | -23.67 |
Energy contribution | -22.57 |
Covariance contribution | -1.11 |
Combinations/Pair | 1.32 |
Mean z-score | -1.04 |
Structure conservation index | 0.67 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 189911 107 - 27905053 CACCACAGUGGCCAGUUCAGGAGCCGAGCUUCCGGCAGCCAUAAACGUGGCUCCCGCAACAUCUGGCGAUAGCUUUAGCUCUUAAAUGGAA-----UAAACAAACGAGUGAC- (((.....((.(((....((((((.(((((..(((.((((((....)))))).))((........)))..)))))..))))))...)))..-----....)).....)))..- ( -30.30) >DroVir_CAF1 24684 113 - 1 CACCACGGUGGCCAGCUCCGGUGCUGAGCUGCCGGCGGCCAUAAAUGUUGCGCCCGCCACGUCCGGCGAUAGCUUGAGCUCUGCAAGGAAUUUGUAUAAAUGAAAUGCCAGCG .....((.((((....(((..(((.(((((.(.((((((((.......)).)))((((......))))...))).)))))).))).))).((..(....)..))..)))).)) ( -39.30) >DroGri_CAF1 23752 108 - 1 CACCACAGUGGCCAGCUCGGGCGCAGAGCUGCCGGCGGCCAUGAAUGUGGCACCUGCCACAUCCGGUGACAGCUUUAGCUCUGCAAAUAGUUUU-AUUUAUAAAUGGA----U ..(((.....(((......)))(((((((((..(((......(.(((((((....))))))).)(....).))).)))))))))..........-.........))).----. ( -39.60) >DroEre_CAF1 26143 106 - 1 CACCACAGUAGCCAGCUCAGGUGCCGAGCUUCCGGCGGCCAUAAACGUGGCUCCCGCGACAUCUGGCGAUAGCUUUAGCUCUAAAAUGUAA------AAACAAGCGAGUAAC- ....(((.(((..((((.(((((((((...(((((.((((((....)))))).))).))..)).)))....)))).)))))))...)))..------...............- ( -28.60) >DroYak_CAF1 25026 105 - 1 CACCACAGUGGCCAGCUCAGGUGCCGAGCUGCCGGCAGCCAUAAACGUGGCUCCCGCUACAUCUGGCGAUAGCUUUAGCUCUAAAUUGUAA------AAACAA-CGAGAAUC- (.(((..(((((((((((.(....)))))))..((.((((((....)))))).)))))))...))).)...((....))(((...((((..------..))))-..)))...- ( -32.30) >DroMoj_CAF1 26632 112 - 1 GACAACGGUGGCCAGCUCUGGAGCUGAGCUGCCGGCGGCCAUAAAUGUGGCGCCCGCCACAUCCGGUGACAGCUUAAGCUCUGCAACGACUCAG-ACUGAUGAAGGACUUAAA .....(((..(((((((....))))).))..)))((.(.(((..(((((((....)))))))...))).).))(((((..((.((.((......-..)).)).))..))))). ( -40.80) >consensus CACCACAGUGGCCAGCUCAGGUGCCGAGCUGCCGGCGGCCAUAAACGUGGCUCCCGCCACAUCCGGCGAUAGCUUUAGCUCUGAAAUGAAA_____UAAACAAACGAGUAAC_ .......((.((((((((.......)))))(.(((..(((((....)))))..))).)......))).))(((....)))................................. (-23.67 = -22.57 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:22 2006