Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,423,538 – 5,423,650 |
Length | 112 |
Max. P | 0.996946 |
Location | 5,423,538 – 5,423,650 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.25 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -27.24 |
Energy contribution | -27.30 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.77 |
Structure conservation index | 0.94 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5423538 112 + 27905053 UUUUUUGGCUUAUAAUU--------UUUUUUCACUAUUUGGGGUUGGCAGCGCUACAAUUUCGGAACUGGAGCUGCUGGCUCCCAAACAAUUUGAGCAUUUGAUUGCUUUAUUUCACUUU .................--------...........((((((((..(((((.(((............))).)))))..)).))))))......(((((......)))))........... ( -28.40) >DroSec_CAF1 10181 115 + 1 UUUUUUGGUUUAUGUUUU-----AUUUUUUUCACUAUUUGGGGUUGGCAGCGCUACAAUUUCGGAACUGGGGUUGCUGGCUCCCAAACAAUUUGAGCAUUUGAUUGCUUUAUUUCACUUU .....(((..((......-----.............((((((((..(((((.(((............))).)))))..)).))))))......(((((......)))))))..))).... ( -27.80) >DroEre_CAF1 10635 107 + 1 ----UUGGUUUAUGUUU---------UUUCUACCUAUUUGGGGUUGGCAGCGCUACAAUUUCGGAACUGGAGCUGCUGGCUCCCAAACAAUUUGAGCAUUUGAUUGCUUUAUUUCACUUU ----..(((........---------.....)))..((((((((..(((((.(((............))).)))))..)).))))))......(((((......)))))........... ( -29.12) >DroYak_CAF1 10959 116 + 1 ----UUGGUUUAUGUUUUUCUUUUUUUUUUUACCUAUUUGGGGUUGGCAGCGCUAGUAUUUCGGAACUGGAACUGCUGGCUCCCAAACAAUUUGAGCAUUUGAUUGCUUUAUUUCACUUU ----.(((..((........................((((((((..((((..(((((........)))))..))))..)).))))))......(((((......)))))))..))).... ( -30.90) >consensus ____UUGGUUUAUGUUU________UUUUUUAACUAUUUGGGGUUGGCAGCGCUACAAUUUCGGAACUGGAGCUGCUGGCUCCCAAACAAUUUGAGCAUUUGAUUGCUUUAUUUCACUUU ....................................((((((((..(((((.(((............))).)))))..)).))))))......(((((......)))))........... (-27.24 = -27.30 + 0.06)
Location | 5,423,538 – 5,423,650 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.25 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -19.92 |
Energy contribution | -20.55 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.07 |
Mean z-score | -2.84 |
Structure conservation index | 0.86 |
SVM decision value | 2.29 |
SVM RNA-class probability | 0.991891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5423538 112 - 27905053 AAAGUGAAAUAAAGCAAUCAAAUGCUCAAAUUGUUUGGGAGCCAGCAGCUCCAGUUCCGAAAUUGUAGCGCUGCCAACCCCAAAUAGUGAAAAAA--------AAUUAUAAGCCAAAAAA ...((((.....((((......))))...((((((((((.(.((((.(((.(((((....))))).))))))).)...)))))))))).......--------..))))........... ( -25.10) >DroSec_CAF1 10181 115 - 1 AAAGUGAAAUAAAGCAAUCAAAUGCUCAAAUUGUUUGGGAGCCAGCAACCCCAGUUCCGAAAUUGUAGCGCUGCCAACCCCAAAUAGUGAAAAAAAU-----AAAACAUAAACCAAAAAA ...(((......((((......))))...((((((((((.(.((((..(..(((((....)))))..).)))).)...)))))))))).........-----....)))........... ( -20.60) >DroEre_CAF1 10635 107 - 1 AAAGUGAAAUAAAGCAAUCAAAUGCUCAAAUUGUUUGGGAGCCAGCAGCUCCAGUUCCGAAAUUGUAGCGCUGCCAACCCCAAAUAGGUAGAAA---------AAACAUAAACCAA---- ...(((.......(((......)))((...(((((((((.(.((((.(((.(((((....))))).))))))).)...)))))))))...))..---------...))).......---- ( -24.60) >DroYak_CAF1 10959 116 - 1 AAAGUGAAAUAAAGCAAUCAAAUGCUCAAAUUGUUUGGGAGCCAGCAGUUCCAGUUCCGAAAUACUAGCGCUGCCAACCCCAAAUAGGUAAAAAAAAAAAGAAAAACAUAAACCAA---- ...(((......((((......))))....(((((((((.(...(((((.(.(((........))).).)))))...))))))))))...................))).......---- ( -22.40) >consensus AAAGUGAAAUAAAGCAAUCAAAUGCUCAAAUUGUUUGGGAGCCAGCAGCUCCAGUUCCGAAAUUGUAGCGCUGCCAACCCCAAAUAGGGAAAAAA________AAACAUAAACCAA____ ...(((......((((......))))....(((((((((.(.((((.(((.(((((....))))).))))))).)...)))))))))...................)))........... (-19.92 = -20.55 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:21 2006