Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,420,934 – 5,421,025 |
Length | 91 |
Max. P | 0.700692 |
Location | 5,420,934 – 5,421,025 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 84.87 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -17.94 |
Energy contribution | -18.75 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.19 |
Mean z-score | -1.69 |
Structure conservation index | 0.74 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5420934 91 - 27905053 UGUCACUUGGCGGCAACCUUGUGCUGUGGCUCUGGACAUAUAACUAUAUCUAUAUAUUUAUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG .(((((..((((.((....)))))))))))...(((((((((.((((((..(((((....)))))..)))))).))))))).))....... ( -24.10) >DroSec_CAF1 7660 91 - 1 UGUCAGUUGGCGGCAACCUUGUGCCGUGGCUCUGGACAUAUAACUAUAUCUAUAUAUCCAUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG ((((((.(.((((((......)))))).)..)).))))............(((((((((((((....)))))))))))))........... ( -26.80) >DroEre_CAF1 8144 81 - 1 UGUCACUUUGCGGCAACCUUGUGCUGCGGCUCUGGACAUGCG------AGUAUAA----CUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG ((((...((((((((......)))))))).....)))).(((------.(((((.----.(((((((....)))))))))))))))..... ( -25.00) >DroYak_CAF1 8366 87 - 1 UGUCACUUUGCGGCAACCUUGUGCUGUGGCUCUGGACAUACGAGUACGAGUAUAA----CUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG ((((...(..(((((......)))))..).....))))..((.(((((.((((..----(((((....))))))))).)))))))...... ( -20.90) >consensus UGUCACUUGGCGGCAACCUUGUGCUGUGGCUCUGGACAUACAACUAUAACUAUAA____AUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG .........((((((......))))))(((..((.((((((...((((.(((((......))))).))))...)))))).))..))).... (-17.94 = -18.75 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:04 2006