Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,419,632 – 5,419,744 |
Length | 112 |
Max. P | 0.852204 |
Location | 5,419,632 – 5,419,744 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.32 |
Mean single sequence MFE | -31.77 |
Consensus MFE | -22.72 |
Energy contribution | -23.22 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.13 |
Mean z-score | -3.33 |
Structure conservation index | 0.72 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5419632 112 + 27905053 CGUUGUUGCCUUAAUGGCAGCAAA----AGCAACAACAACAA---CAACAAGAUCGCUCUGCAAUUUUACGCCAAA-CUAAAAAGGCGAGCGAUCGAGCAGAAAUCGAAGCGAUCGAAAA .(((((((((.....))).((...----.)))))))).....---......(((((((...(.(((((.((((...-.......)))).((......)).))))).).)))))))..... ( -32.40) >DroPse_CAF1 6914 110 + 1 UGUUGUUGCCUUAAUGGUG-CACAUACAAGCAACAA---------CAACAAGAUCGGUCUGCAAUUUUACGCCAAAGCUAAAAAGUCGACCGAUCGAGCCGCAAUCGAAACGAUCAACAG (((((((((....(((...-..)))....)))))))---------))....((((((((.((..(((((.((....))))))).)).))))))))........((((...))))...... ( -30.70) >DroSim_CAF1 6589 116 + 1 CGUUGUUGCCUUAAUGGCAGCAAA----AGCAACAACAACAACAGCAACAAGAUCGCUCUGCAAUUUUACGCCAAAGCUAAAAAGGCGAGCGAUCGAGCAAAAAUCGAAGCGAUCGAAAG .(((((((((.....))).((...----.)))))))).......((.....((((((((.((..(((((.((....)))))))..))))))))))..)).....((((.....))))... ( -35.70) >DroEre_CAF1 6793 107 + 1 UGUUGUUGCCUUAAUGGCAGCAAU----AGCAACAACAAC---------AAGAUCGGUCUGCAAUUUUACGCCAAAACUAAAAAGGCGAGCGAUCGAGCAGAAAUCGAAGCGAUCGGAAA ((((((((((.....)))))))))----)...........---------....((((((..........((((...........)))).((..((((.......)))).))))))))... ( -32.20) >DroYak_CAF1 7028 116 + 1 CGUUGUUGCCUUAAUGGCACCAAA----AGCAACAACAACAACAGCCACAAGAUCGCUCUGCAAUUUUACGCCAAAGCUAAAAAGGCGAGCGAUCGAGCAGAAAUCGAAGCGAUCGGAAA .((((((((.((..((....))))----.)))))))).......((.....((((((((.((..(((((.((....)))))))..))))))))))..)).....((((.....))))... ( -33.80) >DroPer_CAF1 7455 110 + 1 UGUUGUUGCCUUAAUGGUG-CACAUACAAGCAACAA---------CAACAAGAUCGCUCUGCAAUUUUACGCCAAAGCUAAAAAGUCGACCGAUCGAGCCGCAAUCGAAACGAUCAACAG (((((((((....(((...-..)))....)))))))---------))....(((((.(((((..(((((.((....)))))))..((((....))))...)))...))..)))))..... ( -25.80) >consensus CGUUGUUGCCUUAAUGGCAGCAAA____AGCAACAACAAC_____CAACAAGAUCGCUCUGCAAUUUUACGCCAAAGCUAAAAAGGCGAGCGAUCGAGCAGAAAUCGAAGCGAUCGAAAA .(((((((((.....))))..........))))).................((((((((.((..(((((.((....)))))))..)))))))))).........((((.....))))... (-22.72 = -23.22 + 0.50)
Location | 5,419,632 – 5,419,744 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.32 |
Mean single sequence MFE | -35.57 |
Consensus MFE | -25.79 |
Energy contribution | -26.68 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.06 |
Mean z-score | -2.84 |
Structure conservation index | 0.73 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5419632 112 - 27905053 UUUUCGAUCGCUUCGAUUUCUGCUCGAUCGCUCGCCUUUUUAG-UUUGGCGUAAAAUUGCAGAGCGAUCUUGUUG---UUGUUGUUGUUGCU----UUUGCUGCCAUUAAGGCAACAACG ...((((.....)))).....((..(((((((((((.......-...)))(((....))).))))))))..))..---.....(((((((((----((..........))))))))))). ( -36.10) >DroPse_CAF1 6914 110 - 1 CUGUUGAUCGUUUCGAUUGCGGCUCGAUCGGUCGACUUUUUAGCUUUGGCGUAAAAUUGCAGACCGAUCUUGUUG---------UUGUUGCUUGUAUGUG-CACCAUUAAGGCAACAACA ((((.(((((...)))))))))...((((((((..(.(((((((....)).)))))..)..))))))))....((---------(((((((((..(((..-...)))..))))))))))) ( -36.00) >DroSim_CAF1 6589 116 - 1 CUUUCGAUCGCUUCGAUUUUUGCUCGAUCGCUCGCCUUUUUAGCUUUGGCGUAAAAUUGCAGAGCGAUCUUGUUGCUGUUGUUGUUGUUGCU----UUUGCUGCCAUUAAGGCAACAACG ...((((.....)))).....((..((((((((((..(((((((....)).)))))..)).))))))))..))..........(((((((((----((..........))))))))))). ( -37.30) >DroEre_CAF1 6793 107 - 1 UUUCCGAUCGCUUCGAUUUCUGCUCGAUCGCUCGCCUUUUUAGUUUUGGCGUAAAAUUGCAGACCGAUCUU---------GUUGUUGUUGCU----AUUGCUGCCAUUAAGGCAACAACA .....(((((........(((((.........((((...........)))).......))))).)))))..---------..((((((((((----..............)))))))))) ( -26.93) >DroYak_CAF1 7028 116 - 1 UUUCCGAUCGCUUCGAUUUCUGCUCGAUCGCUCGCCUUUUUAGCUUUGGCGUAAAAUUGCAGAGCGAUCUUGUGGCUGUUGUUGUUGUUGCU----UUUGGUGCCAUUAAGGCAACAACG .............((((..(..(..((((((((((..(((((((....)).)))))..)).))))))))..)..)..))))..(((((((((----((((....))..))))))))))). ( -41.40) >DroPer_CAF1 7455 110 - 1 CUGUUGAUCGUUUCGAUUGCGGCUCGAUCGGUCGACUUUUUAGCUUUGGCGUAAAAUUGCAGAGCGAUCUUGUUG---------UUGUUGCUUGUAUGUG-CACCAUUAAGGCAACAACA ..((((((((..((((.......)))).))))))))......((((((.((......))))))))........((---------(((((((((..(((..-...)))..))))))))))) ( -35.70) >consensus CUUUCGAUCGCUUCGAUUUCUGCUCGAUCGCUCGCCUUUUUAGCUUUGGCGUAAAAUUGCAGAGCGAUCUUGUUG_____GUUGUUGUUGCU____UUUGCUGCCAUUAAGGCAACAACA .....(((((...))))).......((((((((((..(((((((....)).)))))..)).))))))))..............(((((((((......((....))....))))))))). (-25.79 = -26.68 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:02 2006