Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,418,171 – 5,418,275 |
Length | 104 |
Max. P | 0.768028 |
Location | 5,418,171 – 5,418,275 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.37 |
Mean single sequence MFE | -23.94 |
Consensus MFE | -18.16 |
Energy contribution | -17.72 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.26 |
Mean z-score | -1.60 |
Structure conservation index | 0.76 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5418171 104 + 27905053 ---------------UAUUUGGUGCUAUUUUUGGAGUGGCUUGUA-CAUGUGAAUUUGCUGAUUUCAAGUAGCUCCAAAUGUUAUUUAUUGUUACCAAUAUAAUUUGUGUUGGGCAUUUC ---------------(((((((.(((((..((((((((((..((.-(....).))..))).)))))))))))).))))))).............(((((((.....)))))))....... ( -27.60) >DroSec_CAF1 5131 105 + 1 ---------------UAUUUGGUGUUAUUUUUGGAGAGGCUUGUAUCAAAUGAAUUUGCUGAUUUCAAGUAGUUCUGAAUGUUAUUUAUUGUUACCAAUACAAUUUGUGUUGGGCAACUC ---------------..............((..(((..(((((.((((...........))))..)))))..)))..))...........(((.(((((((.....)))))))..))).. ( -22.30) >DroSim_CAF1 5125 104 + 1 ---------------UAUUUGGUGCUAUUUUUGGAGAGGCUUGUA-CAUAUGAAUUUGCUGAUUUCAAGUAGCUCUAAAUGUUAUUUAUUGUUACCAAUACAAUUUGUGUUGGGCAACUC ---------------(((((((.(((((..((((((.(((..((.-(....).))..)))..))))))))))).))))))).........(((.(((((((.....)))))))..))).. ( -27.40) >DroEre_CAF1 5301 114 + 1 GUGCCACUAAUCCAUUGUAUGUUGCUAUUUUU-AAGAGACUUGUA-----UGAAUUGGCCGAUUUCAAGUAGCUUUAAAUGUUAUUUAUUGUUACCAAUACAAUUCGUGUUAGGCAACUC .((((...............((..((......-.))..))...((-----(((((((...(....)..(((((..(((((...)))))..))))).....)))))))))...)))).... ( -19.70) >DroYak_CAF1 5416 114 + 1 GUGCCGCUAAACCAUAAUUCGGUGCUAUAUUU-AAGAGACUUGUA-----UGAAUUUGCCGAUUUCAAGUAGCUUUAAAUGUUAUUUAUUGCUACCAAUACAAUUCGAGUUGAGCAACUC (..(((.............)))..).......-....((.(((((-----((((.........)))..(((((..(((((...)))))..)))))..)))))).))(((((....))))) ( -22.72) >consensus _______________UAUUUGGUGCUAUUUUUGGAGAGGCUUGUA_CA__UGAAUUUGCUGAUUUCAAGUAGCUCUAAAUGUUAUUUAUUGUUACCAAUACAAUUUGUGUUGGGCAACUC ......................(((....(((((((..(((((........(((((....))))))))))..)))))))...............(((((((.....)))))))))).... (-18.16 = -17.72 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:00 2006