Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 848,068 – 848,184 |
Length | 116 |
Max. P | 0.577018 |
Location | 848,068 – 848,184 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.63 |
Mean single sequence MFE | -30.18 |
Consensus MFE | -16.74 |
Energy contribution | -18.05 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.19 |
Mean z-score | -2.22 |
Structure conservation index | 0.55 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 848068 116 - 27905053 CAUAUUUUAUAACAAUAAAGCAGCUACGACAGCAGCAACAAAGUGCAAAUGUGCCAGGCACUUUUGUUUGCUCGGGCACAUGU----AUUCUGUGCGGAAACUCACGCAGAUGUGGCAAA ......................((((((.(.((.(((.((.((((((..((((((.((((........))))..)))))))))----))).)))))(....)....)).).))))))... ( -34.80) >DroSec_CAF1 23745 120 - 1 CAUAUUUUAUAACAAUAAAGCCGCUACGACAGCAGCAACAAAGUGCAAAUGUGCCAGGCACUUUUGUUUGCUCGAGCACAUGUACAUAUGUUGUGCGGAAACUAACACAGAUGUAGCUAA ......................((((((.(.(((.(((((..(((((..((((((..(((........)))..).))))))))))...))))))))(....).......).))))))... ( -34.00) >DroSim_CAF1 22995 116 - 1 CAUAUUUUAUAACAAUAAAGCAGCUACGACAGCAGCAACAAAGUGCAAAUGUGCCAGGCACUUUUGUUUGCUCGAGCACAUGU----AUGUUGUGCCGAAACUAACACAGAUGUAGCUAA .....................(((((((.(....((((((((((((...((...)).)))).)))).))))(((.(((((...----....))))))))..........).))))))).. ( -30.20) >DroEre_CAF1 24827 100 - 1 CAUAUUCUACAACAAUAAAGCAGCUACAGCAGCGGCAACAAGGUGAAAAUGUGCCUGGCACUUUUGU--------------------AUUCCUUGCGGAAACUCACACAAAUGUGGCUAA .....................(((((((...(((....)((((...(((.((((...)))).)))..--------------------...))))))(....).........))))))).. ( -21.70) >consensus CAUAUUUUAUAACAAUAAAGCAGCUACGACAGCAGCAACAAAGUGCAAAUGUGCCAGGCACUUUUGUUUGCUCGAGCACAUGU____AUGCUGUGCGGAAACUAACACAGAUGUAGCUAA ......................((((((..((((((((..((((((...........)))))))))).))))..................(((((.(....)...))))).))))))... (-16.74 = -18.05 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:42 2006