| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,412,442 – 5,412,535 |
| Length | 93 |
| Max. P | 0.995025 |
| Location | 5,412,442 – 5,412,535 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 70.25 |
| Mean single sequence MFE | -17.17 |
| Consensus MFE | -10.56 |
| Energy contribution | -8.80 |
| Covariance contribution | -1.76 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.53 |
| SVM RNA-class probability | 0.995025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5412442 93 - 27905053 UCAUAAUAAAUGAAGUAAAUUAUUUAGAUCGCACUACACAAGUCAUUAAAGUAGAACUAGCUUUUUGACGCUAUUUUAAAGCUAGUUCUGCAA ......(((((((......)))))))........................((((((((((((((..((.....))..)))))))))))))).. ( -22.50) >DroSim_CAF1 10959 92 - 1 U-AUAAUAAAUCAAAUAAAUUGUUCAGAUUGCACUAAACUACUCAUUAAAGUGAAACUAGCUUUUUGAAGCUACUUUAAAGCCAGUUUUGAAA .-....................((((((..((..........((((....))))...((((((....)))))).......))....)))))). ( -11.60) >DroEre_CAF1 17451 88 - 1 GAAUAACAACUUGAAUACAUUAUUAAGAUUGCAC-----GGUUCAUUAAAUUAGUGCUAGCUUUUUCUAGCUAGCUUUGAAUCAGUACUAAAA ((((..((((((((........))))).)))...-----.))))......((((.(((((((......))))))).))))............. ( -17.40) >consensus U_AUAAUAAAUCAAAUAAAUUAUUAAGAUUGCACUA_ACAACUCAUUAAAGUAGAACUAGCUUUUUGAAGCUACUUUAAAGCCAGUUCUGAAA ..................................................((((((((.(((((..(......)...))))).)))))))).. (-10.56 = -8.80 + -1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:58 2006