Locus 1888

Sequence ID 3R_DroMel_CAF1
Location 5,407,997 – 5,408,106
Length 109
Max. P 0.747106
window3099

overview

Window 9

Location 5,407,997 – 5,408,106
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 91.56
Mean single sequence MFE -27.72
Consensus MFE -22.16
Energy contribution -22.16
Covariance contribution 0.00
Combinations/Pair 1.16
Mean z-score -1.60
Structure conservation index 0.80
SVM decision value 0.47
SVM RNA-class probability 0.747106
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5407997 109 + 27905053
UCUCACUGUAACAAUUGCAUCUUUUCGCAAGUGAAAGUUGUGUGUUAGCCAUGUUUUCACAAUCGAGCCACUUGGGGCUUAAUUAUGCAUAGUAUGGUUAUUUUCCUGC
........(((((...(((.((((((....).))))).))).)))))((((((((..((.(((..((((......))))..))).))...))))))))........... ( -24.70)
>DroSec_CAF1 11929 109 + 1
UCUCACUGUAACAAUUGCAACUUUUCACAAGUGAAAGUUGUGUGUUAGCCAUGUUUUCACAAUCGAGCCACUUGGGGCUUAAUUAUGCAUAGCAUGGUUAUUUUCCUGC
........(((((...((((((((.((....)))))))))).)))))((((((((..((.(((..((((......))))..))).))...))))))))........... ( -31.70)
>DroSim_CAF1 6878 109 + 1
UCUCACUGUAACAAUUGCAACUUUUCGCAAGUGAAAGUUGUGUGUUAGCCAUGUUUUCACAAUCGAGCCACUUGGGGCUUAAUUAUGCAUAGCAUGGUUAUUCUCCUGC
........(((((...((((((((((....).))))))))).)))))((((((((..((.(((..((((......))))..))).))...))))))))........... ( -33.70)
>DroEre_CAF1 11184 109 + 1
CCUCACUGUAAAAAUUACAACUUUUCACAAGUGAAAGUUGUGUGUGGGCCACGUUUUCACAAUAGAGCCACUUGGGGCUUAAUUAUGCAUAGGAUGGUUAUUUUCCUGC
.....((((......(((((((((.((....)))))))))))((((((.......))))))))))(((((((((..((........)).)))).))))).......... ( -24.20)
>DroYak_CAF1 7018 109 + 1
CCUCACUGUUGAAAAUGCAACUUUUCGCAAGUGAAAGUUGUGUGUGGGCCACGUUUUCACAAACAAGCCACUUGGGACUUAAUUAUACAUAGGAUGGUUAUUUUCCUGU
((....(((.((((((((((((((((....).)))))))))(((.....))))))))))))..((((...))))))............((((((.........)))))) ( -24.30)
>consensus
UCUCACUGUAACAAUUGCAACUUUUCGCAAGUGAAAGUUGUGUGUUAGCCAUGUUUUCACAAUCGAGCCACUUGGGGCUUAAUUAUGCAUAGCAUGGUUAUUUUCCUGC
.(((............((((((((((....).)))))))))(((..(((...)))..)))....)))......((((..(((((((((...)))))))))..))))... (-22.16 = -22.16 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:57 2006