Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,401,571 – 5,401,681 |
Length | 110 |
Max. P | 0.813035 |
Location | 5,401,571 – 5,401,681 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 76.33 |
Mean single sequence MFE | -30.62 |
Consensus MFE | -18.50 |
Energy contribution | -19.22 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.08 |
Mean z-score | -1.65 |
Structure conservation index | 0.60 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.813035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5401571 110 - 27905053 AACAGGUCUUCACCUUGAUCAAGGAGGGCGUCAUUCCGCCAUUCUGUGACCUCCUUUCAUGCCAGGAUACGCAAGUUAUAAAUGUAAGUAUA---AUUUGCGUCUCUUCACAU ...(((((....((((....))))..((((......)))).......)))))......(((..((((.((((((((((((........))))---)))))))).))))..))) ( -33.20) >DroPse_CAF1 7672 106 - 1 AGCAGGUCUUCACACUGAUCAAGGAGGGUGUCAUCCCGCCGUUCUGUGAUCUCCUCUCAUGCCAGGAUACGCAAGUUAUCAAUGUAAGAGAUGUCCCCUGCGUA-------CG .(((((..........(((((((((.((((......)))).)))).)))))...((((.(((...(((((....).))))...))).)))).....)))))...-------.. ( -35.50) >DroGri_CAF1 478 92 - 1 AACAGGUGUUCACAUUAAUAAAGGAGGGCGUCAUUCCGCCUUUCUGCGAUCUGCUCUCGUGCCAGGAUACACAAGUGAUCAAUGUAAGC---------------------CAC ....(((....(((((.....(((((((((......)))))))))..((((....((.(((........))).)).)))))))))..))---------------------).. ( -26.20) >DroEre_CAF1 4629 107 - 1 AACAGGUCUUCACCCUGAUCAAGGAGGGCGUUAUUCCGCCAUUCUGUGAGCUGCUUUCGUGCCAGGAUACGCAAGUUAUAAAUGUAAG---A---AUCUGCGACUCAUUGUAG ..((((.......))))....((((.((((......)))).))))(((((.(((.(((.(((......((....)).......))).)---)---)...))).)))))..... ( -26.92) >DroAna_CAF1 392 96 - 1 AACAGGUCUUUACUCUGAUCAAGGAGGGCGUCAUUCCGCCGUUCUGUGAUCUCCUUUCGUGCCAGGAUACGCAAGUUAUCAAUGUAAGG-----------CAUUUUU------ .....(((((.((...(((((((((.((((......)))).)))).)))))..............(((((....).))))...))))))-----------)......------ ( -26.40) >DroPer_CAF1 7809 106 - 1 AGCAGGUCUUCACACUGAUCAAGGAGGGUGUCAUCCCGCCGUUCUGUGAUCUCCUCUCAUGCCAGGAUACGCAAGUUAUCAAUGUAAGAGAUGUCCCCUGCGUA-------CG .(((((..........(((((((((.((((......)))).)))).)))))...((((.(((...(((((....).))))...))).)))).....)))))...-------.. ( -35.50) >consensus AACAGGUCUUCACACUGAUCAAGGAGGGCGUCAUUCCGCCGUUCUGUGAUCUCCUCUCAUGCCAGGAUACGCAAGUUAUCAAUGUAAGA________CUGCGUA_______AG .((((((.........(((((((((.((((......)))).)))).))))).........)))..(((((....)).)))..)))............................ (-18.50 = -19.22 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:53 2006