Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,400,858 – 5,400,978 |
Length | 120 |
Max. P | 0.634281 |
Location | 5,400,858 – 5,400,978 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -22.67 |
Energy contribution | -22.55 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.19 |
Mean z-score | -1.68 |
Structure conservation index | 0.68 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5400858 120 + 27905053 GUCCUUGCAUUGCACAUUCACACACCCAAGAGUGUGUGUAUGUCUGAAUUUUGUAAUUUUGUUAACACAGAAUUGAGAGAAGCUAAAACGGCUGCAGCGGAUUAUCCGUUGUGUAUCCUC (((.((.....((.(((.(((((((......))))))).)))(((.((((((((............)))))))).)))...))...)).))).(((((((.....)))))))........ ( -33.60) >DroSim_CAF1 10589 120 + 1 GUCCUUGCAUUGCACAUUCACACACCCAGGAGUGUGUGUAUGUCUGAAUUUUGUAAUUUUGAUAACACAGAAUUGAGAGAAGCUAAAACGGCUGCAGCGGAUUAUCCGUUGUGUAUCCUC (((.((.....((.(((.(((((((......))))))).)))(((.((((((((............)))))))).)))...))...)).))).(((((((.....)))))))........ ( -33.60) >DroYak_CAF1 11010 120 + 1 GUUCUUGCAUCGCACAGCCACACACGCACGAGUGUGUGUACGUCUGAAUUUUGUAAUUUUGAUAACACAGAAUUGAGAGAAGCUAAAACGGCUGCAGCGGAUUAUCCGUUGUGUAUCCUC .....((((.....(((((((((((((....))))))))...(((.((((((((............)))))))).)))...........)))))((((((.....))))))))))..... ( -38.20) >DroAna_CAF1 10484 119 + 1 CUUCUUGCACUGCAUACAACCAUACACGUGCGUGUAUGCGUCGCUGAAAUUAUUAAUUUUGAUAACACAGAAUUGAGAGAAGCUAAAACUGUUGCAGCAGAGU-CCAGUGGUGAAUUUUU .......(((..(.....(((((((((....))))))).)).((((......(((((((((......)))))))))....(((.......))).)))).....-...)..)))....... ( -27.80) >consensus GUCCUUGCAUUGCACAUUCACACACCCAAGAGUGUGUGUAUGUCUGAAUUUUGUAAUUUUGAUAACACAGAAUUGAGAGAAGCUAAAACGGCUGCAGCGGAUUAUCCGUUGUGUAUCCUC .....(((((..(......((((((((....))))))))..(((((.......((((((((......))))))))...(.(((.......))).)..))))).....)..)))))..... (-22.67 = -22.55 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:51 2006