Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,400,466 – 5,400,580 |
Length | 114 |
Max. P | 0.607600 |
Location | 5,400,466 – 5,400,580 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.49 |
Mean single sequence MFE | -35.35 |
Consensus MFE | -21.59 |
Energy contribution | -21.84 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.39 |
Mean z-score | -1.81 |
Structure conservation index | 0.61 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5400466 114 - 27905053 -UCGGCCGAGCUGUUA-AUAAUUAGCGUUUAUUUCAGCUAGUGCGUCACUUGAGCACGUUUCCCAUUAAUGCGCAAUUGCCCGUCUACCU--GGCAGGGCAGCUGAAA-AAUCGGCUUU- -..((((((((((...-.....)))).....((((((((.((((.((....)))))).....................(((((((.....--))).))))))))))))-..))))))..- ( -41.00) >DroSim_CAF1 10195 114 - 1 -UCGGCCGAGCUGCUA-AUAAUUAGCGUUUAUUUAAGCUAGUGCGUCACUUGAGCACGUUUCCCAUUAAUGCGCAAUUGCCCGUCUACCU--GGCAGGGCAGCUGAAA-AAUCGGCUUU- -..((((((((.((..-.....((((..........))))((((.((....)))))).............))))..(((((((((.....--))).))))))......-..))))))..- ( -34.90) >DroYak_CAF1 10584 119 - 1 GUCGGCCGAUCUGCUAAAUAAUUAGCGUUUGUUUGAGCUAGUGCGUCACUUGAGCACGUUUCUCAUUAAUGCGCAAUUGCCUGUCUACCUUUUGUAGGGCAGUUAAAAAAAACAGUUCU- .......((.(((...........((((.....((((...((((.((....))))))....)))).....))))(((((((...((((.....)))))))))))........))).)).- ( -30.50) >DroAna_CAF1 10112 108 - 1 -UCGCCCGAGUUGCUG-CUAAUUAGCAUUUAUUCCGAUUUGUGCGUCACUUGAGCACGUUUUCCAUUAAUGCGCAAUAGCC-------GU--GGCAGCUGGGCUGGAC-AAUCGCGUUUG -..((((.((((((..-(......(((((......((..(((((.((....)))))))..)).....)))))((....)).-------).--.)))))))))).((((-......)))). ( -35.00) >consensus _UCGGCCGAGCUGCUA_AUAAUUAGCGUUUAUUUCAGCUAGUGCGUCACUUGAGCACGUUUCCCAUUAAUGCGCAAUUGCCCGUCUACCU__GGCAGGGCAGCUGAAA_AAUCGGCUUU_ ...((((((..(((((......))))).....(((((((.((((.((....)))))).....................((((..............)))))))))))....))))))... (-21.59 = -21.84 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:50 2006