Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,400,270 – 5,400,384 |
Length | 114 |
Max. P | 0.578237 |
Location | 5,400,270 – 5,400,384 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.62 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -17.89 |
Energy contribution | -19.57 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.11 |
Mean z-score | -2.30 |
Structure conservation index | 0.61 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5400270 114 - 27905053 UUCCCUCAAUUGAGGGAUCAAAUUGUAUUAAUGACUUAUCUGCAAAGCAUCAGUUUCGCUAGUGUUCUGUA------UACAGUAUAGGAUACUUUAAAUCAGUUAGAUUUAGUUGAGUGA .((((((....))))))................(((((...((.((((....)))).)).(((((((((((------(...))))))))))))(((((((.....))))))).))))).. ( -29.60) >DroSim_CAF1 9999 114 - 1 UUCCCUCAAUUGAGGGAUCAAAUUAUGUUAAUUACUCAUCUGCAAGGCAUCAGUUUCGCUAGUGUUCUGUA------UACAGUAUAGGAUACUUUAAAUUAUUAAGAUUUAGUUGGGUGA .((((((....))))))..............(((((((.((((.((((....)))).)).(((((((((((------(...)))))))))))).................)).))))))) ( -30.20) >DroYak_CAF1 10382 120 - 1 UUCCCCCAAUUGAUGGAUCAAGUUAUGUUAAUGACUCAUCUGGAAAGCAUCAAUUUCGCUAGUCUUCAGGUGAGACCGAUAGUAUAAGAUACUUUAAAUCAUUUAGCUUUAGUUGGGUAA ....(((((((((.((.((..(((((....)))))(((((((((.(((.........)))....)))))))))))))((((((((...)))))....)))........)))))))))... ( -28.50) >consensus UUCCCUCAAUUGAGGGAUCAAAUUAUGUUAAUGACUCAUCUGCAAAGCAUCAGUUUCGCUAGUGUUCUGUA______UACAGUAUAGGAUACUUUAAAUCAUUUAGAUUUAGUUGGGUGA .((((((....))))))................(((((.(((...(((.........)))(((((((((((...........)))))))))))................))).))))).. (-17.89 = -19.57 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:49 2006