Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,399,574 – 5,399,679 |
Length | 105 |
Max. P | 0.882910 |
Location | 5,399,574 – 5,399,679 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.16 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -27.44 |
Energy contribution | -27.67 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.08 |
Mean z-score | -2.22 |
Structure conservation index | 0.89 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5399574 105 + 27905053 UUUUGCACGAUCACAGGUUCAUUAGCUAUCGCACAACAUCCUUGACCUUGAGGAGAGUGUGCCAAUUUCCGCAAUUUCCGCAGCAAAAUGUUGACGGAAGCAAAU .(((((.((......(((......)))...(((((...(((((......)))))...))))).......))....(((((((((.....)))).)))))))))). ( -29.90) >DroSim_CAF1 9313 105 + 1 UUUUGCCCGAUCACAGGUUCAUUAGCUGCCGCACAACAUCCUUGACCUUGAGGAGAGUGUGCCAAUUUCCGCAAUUUCCGCAGCUAAAUGUUGACGGAAGCAACA ..(((((((.(((((......((((((((.(((((...(((((......)))))...))))).((((.....))))...)))))))).)).))))))..)))).. ( -31.10) >DroYak_CAF1 9669 96 + 1 UUUUGCUCGAUCACAGGUUCAUUAGCUGCCGCACAACAUCCUUGACCUUGAGGAGAGUGUGCCAAUUU---------CCGCAGCUAAAUGUUGACGGAAGCAAAA .(((((.........(((.........)))(((((...(((((......)))))...)))))....((---------(((((((.....)))).)))))))))). ( -31.10) >consensus UUUUGCACGAUCACAGGUUCAUUAGCUGCCGCACAACAUCCUUGACCUUGAGGAGAGUGUGCCAAUUUCCGCAAUUUCCGCAGCUAAAUGUUGACGGAAGCAAAA ..((((.........(((.........)))(((((...(((((......)))))...))))).............(((((((((.....)))).))))))))).. (-27.44 = -27.67 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:48 2006