Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,399,219 – 5,399,316 |
Length | 97 |
Max. P | 0.978548 |
Location | 5,399,219 – 5,399,316 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 95.88 |
Mean single sequence MFE | -35.20 |
Consensus MFE | -32.39 |
Energy contribution | -33.17 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -3.36 |
Structure conservation index | 0.92 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5399219 97 + 27905053 GCUGAACGGCUGUGGACGACAUUUUGUUGUUGUUGCUAUUUGUGCGAAAAAAUUCCACGGGUUGCAGUGAUGAUAAUUUAUGCGUCCAAACUCGUUG ....(((((...((((((.(((.((((..(..((((.(((((((.(((....)))))))))).))))..)..))))...)))))))))...))))). ( -36.70) >DroSim_CAF1 8947 97 + 1 GCUGAACGGCUGUGGACGACAUUUUGUUGUUGUUGCUAUUUGUGCGAAAAAAUUCCACGGGGCGCAGUGAUGAUAAUUUAUGCGUCCAAACUCGUUG ....(((((...((((((.(((.((((..(..((((..((((((.(((....)))))))))..))))..)..))))...)))))))))...))))). ( -34.60) >DroYak_CAF1 9301 97 + 1 GCUGAACGGCGGCGGACGACAUUUUGUUGUUGUUGCUAUUUGUGCGAAAAAAUUCCACGGGUCGCAGUGAUGGUAAUUUAUGCGUCCAAACUCGAUG ((((.....))))(((((.(((.(((..((..((((.(((((((.(((....)))))))))).))))..))..)))...)))))))).......... ( -34.30) >consensus GCUGAACGGCUGUGGACGACAUUUUGUUGUUGUUGCUAUUUGUGCGAAAAAAUUCCACGGGUCGCAGUGAUGAUAAUUUAUGCGUCCAAACUCGUUG ....(((((...((((((.(((.((((..(..((((.(((((((.(((....)))))))))).))))..)..))))...)))))))))...))))). (-32.39 = -33.17 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:47 2006