Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,397,078 – 5,397,197 |
Length | 119 |
Max. P | 0.783276 |
Location | 5,397,078 – 5,397,197 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -39.04 |
Consensus MFE | -32.85 |
Energy contribution | -32.97 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.01 |
Structure conservation index | 0.84 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5397078 119 + 27905053 GUUGUUGGAGGAGUGGCAGACAUUCCGGAACGCUACUGUUUUUCCUAUAUUUUCCAACGUCCAACCAAUAGCAGAUGCACAGAGUAACUGCUGGUCAGGUUUGCGAAUUGAGAGGAAUU ...((((((((((((.....))))))((((.((....))..)))).......)))))).(((((((..((((((.(((.....))).))))))....))))..(.......).)))... ( -34.10) >DroSim_CAF1 6911 119 + 1 GGAGUUGGAGGAGUGGCAGACAUUCCGGACUGCAGCUGUUUUUCCUAUAUUUUCCAACGUCCAAGCAAUAGCAGUUGCACAGAGUAACUGCUGGUCAGGUUUGCGAAUCGAGAGGAAUU (((((((((((((((.....))))))(((..((....))...))).......)))))).)))..((((((((((((((.....)))))))))).......))))...((....)).... ( -40.51) >DroYak_CAF1 6976 118 + 1 GGAGUUGGAGGAGUGGUAGACAUUCCGGAUUGCAGGUGUUUUCCCUCUAUUUUCCAACGUCCAACCGAUCGCAGUUGCAAAGAGAAACUGCUG-UUGGAUUUGCAAGUCGAGAGGAAAU (((((((((((((((.....))))))(((..((....))..)))........)))))).)))..((..(((.(.(((((((....(((....)-))...))))))).))))..)).... ( -42.50) >consensus GGAGUUGGAGGAGUGGCAGACAUUCCGGAAUGCAGCUGUUUUUCCUAUAUUUUCCAACGUCCAACCAAUAGCAGUUGCACAGAGUAACUGCUGGUCAGGUUUGCGAAUCGAGAGGAAUU ...((((((((((((.....))))))(((..((....))..)))........)))))).(((......((((((((((.....))))))))))....((((....))))....)))... (-32.85 = -32.97 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:43 2006