Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,391,378 – 5,391,498 |
Length | 120 |
Max. P | 0.800375 |
Location | 5,391,378 – 5,391,498 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.94 |
Mean single sequence MFE | -38.40 |
Consensus MFE | -25.54 |
Energy contribution | -24.85 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.48 |
Mean z-score | -1.51 |
Structure conservation index | 0.67 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5391378 120 - 27905053 AAACUCUGCGAGUUAUGGAUGGUGGUGCCGCCAAGAAUGACUUUAUAGCCGGCGUUGUUUAACUGGUGCACCGCUAAGGCUUCCUCGUACGUGGCACCGCCAAUAAUGAACACGACAACC ......((((.(((.....((((((((((((...(.((((......((((((((.(((.........))).))))..))))...)))).)))))))))))))......))).)).))... ( -38.90) >DroVir_CAF1 1236 120 - 1 AAACUCUGGGAAUUGUGUAUGGUGGUGCCGCCCAGAAUCACCCUAUAGCCGGCAUUAUUGAGCUGAUGUACUGUGAGGGCUUCCUCGUAGGUGGCGCCACCGAUGAUAAAGACAACCACC ......(((......(((.(((((((((((((..((....((((((((...((((((......)))))).)))).)))).....))...)))))))))))))...))).......))).. ( -42.12) >DroGri_CAF1 1261 120 - 1 AAGCUCUGGGAAUUGUGUAUGGUGGUGCCACCGAGGAUGAUCCGAUAGCCAGCAUUAUUCAGUUGAUGUACCGUCAAUGCCUCCUCAUAGGUAGCGCCGCCAAUGAUGAAGACAACCACU ..(.(((....((..(...(((((((((.((((((((.(....((..(...((((((......)))))).)..))....).)))))...))).))))))))))..))..))))....... ( -34.20) >DroWil_CAF1 1229 120 - 1 AAUGACUGGGAAUUGUGUAUGGUGGUGCCACCUAAAAUUAUUUUGUAGCCAGCAUUGUUUAGCUGAUGGACAGCCAAUGCUUCUUCGUAGGUGGCGCCGCCAAUGAUGAAGACAAUCACC .......((..(((((((.(((((((((((((((.........((.((..(((((((....((((.....))))))))))).)).)))))))))))))))))...))....)))))..)) ( -42.70) >DroMoj_CAF1 1718 120 - 1 AAGCUUUGGGAAUUGUGUACAGUGGUGCCGCCAAGGAUCACCCGAUAUCCAGCAUUGUUCAGCUGAUGUACGGCAAAGGCCUCUUCGUACGUGGCACCGCCAAUGAUAAAAACCACUACC ......(((...((((.....((((((((((...((.....))......((((........))))..(((((((....))).....)))))))))))))).....))))...)))..... ( -34.20) >DroAna_CAF1 1223 120 - 1 AAGCUUUGCGAAUUGUGUAUUGUUGUGCCACCGAGGAUGACCCGGUAACCAGCAUUAUUGAGCUGGUGAACAGAUAAGGCCUCCUCAUAGGUGGCACCGCCAAUUAUAAAGACAACCACU ..((((((..(((((......((.(((((((((((((.(.((..((.((((((........))))))......))..))).)))))...)))))))).))))))).))))).)....... ( -38.30) >consensus AAGCUCUGGGAAUUGUGUAUGGUGGUGCCACCAAGAAUGACCCGAUAGCCAGCAUUAUUCAGCUGAUGUACAGCCAAGGCCUCCUCGUAGGUGGCACCGCCAAUGAUAAAGACAACCACC ............((((...(((((((((((((..((.....))......((((........))))........................)))))))))))))...))))........... (-25.54 = -24.85 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:42 2006