Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,384,279 – 5,384,399 |
Length | 120 |
Max. P | 0.556510 |
Location | 5,384,279 – 5,384,399 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.11 |
Mean single sequence MFE | -43.79 |
Consensus MFE | -33.71 |
Energy contribution | -33.83 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.42 |
Mean z-score | -1.48 |
Structure conservation index | 0.77 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5384279 120 - 27905053 GCUGCGCAGCGAGAUCGUGGGCGCCAUUAAGAUGCGCGUCUACUUGUCGGGAAUGCCAGAGCUGCGACUGGGUCUCAACGACAAGGUUCUGUUCGAGAGCACGGGCCGCGGCAAGUCAAA ((((((((((..(((.(((((((((((....))).))))))))..)))((.....))...)))))......(((.....)))..(((((((((....)))).))))))))))........ ( -46.70) >DroVir_CAF1 3124 120 - 1 GCUGCGCAGCGAAAUCGUUGGCGCCAUUAAAAUGCGCGUCUAUUUGUCUGGCAUGCCAGAGCUGCGUUUGGGCCUCAACGAUAAGGUGCUCUUCGAGAGCACUGGGCGUGGCAAAUCCAA ((..(((......((((((((.(((....((((((((..(.....)(((((....))))))).)))))).))).))))))))..(((((((.....)))))))..)))..))........ ( -51.80) >DroGri_CAF1 3101 120 - 1 UCUGCGCAGCGAAAUCGUUGGCGCCAUCAAAAUGCGUGUCUAUCUUUCGGGCAUGCCAGAGCUGCGUUUGGGCCUCAACGAUAAGGUGCUCUUCGAGAGCACCGGCCGUGGCAAAUCCAA ..(((((.((...((((((((.(((....((((((((((((.......))))))((....)).)))))).))).))))))))..(((((((.....))))))).)).)).)))....... ( -46.10) >DroWil_CAF1 3363 120 - 1 GCUGCGCAGUGAGAUUGUAGGAGCUAUUAAAAUGCGAGUUUACCUGUCAGGGAUGCCGGAAUUGCGUUUGGGUCUGAACGACAAAGUGCUGUUCGAAAGCACUGGACGCGGCAAAUCCAA .(((.((((((((.(((((.............))))).)))).)))))))((((((((...((((((((......))))).)))((((((.......)))))).....)))))..))).. ( -35.12) >DroMoj_CAF1 2850 120 - 1 GCUGCGUAGCGAAAUUGUGGGCGCCAUCAAAAUGCGCGUCUAUCUGUCCGGUAUGCCGGAGCUUCGUUUGGGACUCAACGACAAGGUGCUCUUCGAGAGCACCGGACGUGGCAAAUCCAA ((..((((((......(((((((((((....))).))))))))...(((((....))))))))(((((........)))))...(((((((.....)))))))..)))..))........ ( -48.30) >DroAna_CAF1 2511 120 - 1 UCUUCGAAGCGAAAUUGUGGGCGCUAUAAAAAUGCGCGUUUAUCUUUCGGGCAUGCCUGAGCUGCGCCUAGGUCUCAAUGACAAAGUCCUAUUCGAGAGCACGGGGCGAGGCAAAUCCAA ..((((...))))....(((((((.........)))).........(((((....)))))(((.(((((.(.((((((((((...)))..))).)))).)...))))).)))....))). ( -34.70) >consensus GCUGCGCAGCGAAAUCGUGGGCGCCAUUAAAAUGCGCGUCUAUCUGUCGGGCAUGCCAGAGCUGCGUUUGGGUCUCAACGACAAGGUGCUCUUCGAGAGCACCGGACGUGGCAAAUCCAA ((((((((((......(((((((((((....))).))))))))...(((((....))))))))))((((((..(((..(((...........))).)))..)))))))))))........ (-33.71 = -33.83 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:41 2006